HAPBLOCK: Stata module to perform haplotype analysis to identify the edges of haplotype blocks

Statistical Software Components from Boston College Department of Economics

Abstract: This command systematically fits a series of hapipf log-linear models that attempts to find the edge of areas containing high LD within a set of loci. The log-linear model is fitted using iterative proportional fitting which is available using ssc and is called ipf (version 1.36 or later). Additionally, the user will also have to install hapipf (version 1.44 or later). This algorithm can handle very large contingency tables and converges to maximum likelihood estimates even when the likelihood is badly behaved.

Language: Stata
Requires: Stata version 8.0
Keywords: haplotype; analysis (search for similar items in EconPapers)
Date: 2004-04-07
Note: This module may be installed from within Stata by typing "ssc install hapblock". Windows users should not attempt to download these files with a web browser.

Downloads: (external link)
http://fmwww.bc.edu/repec/bocode/h/hapblock.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/h/hapblock.hlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/l/llmoSNPhb.pdf documentation (application/pdf)

Related works:
This item may be available elsewhere in EconPapers: Search for items with the same title.

Ordering information: This software item can be ordered from
http://repec.org/docs/ssc.php

Access Statistics for this software item

More software in Statistical Software Components from Boston College Department of Economics
Address: Boston College, 140 Commonwealth Avenue, Chestnut Hill MA 02467 USA
Contact information at EDIRC.
Series data maintained by Christopher F Baum ().