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On the use of double cross-validation for the combination of proteomic mass spectral data for enhanced diagnosis and prediction

B.J.A. Mertens, Y.E.M. van der Burgt, B. Velstra, W.E. Mesker, R.A.E.M. Tollenaar and A.M. Deelder

Statistics & Probability Letters, 2011, vol. 81, issue 7, 759-766

Abstract: We consider a proteomic mass spectrometry case-control study for the calibration of a diagnostic rule for the detection of early-stage breast cancer. For each patient, a pair of two distinct mass spectra is recorded, each of which is derived from a different prior fractionation procedure on the available patient serum. We propose a procedure for combining the distinct spectral expressions from patients for the calibration of a diagnostic discriminant rule. This is achieved by first calibrating two distinct prediction rules separately, each on only one of the two available spectral data sources. A double cross-validatory approach is used to summarize the available spectral data using the two classifiers to posterior class probabilities, on which a combined predictor can be calibrated.

Keywords: Clinical; mass; spectrometry; proteomics; Predictive; data; fusion; Double; cross-validation; Classification; Model; combination (search for similar items in EconPapers)
Date: 2011
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