Linearization of the Kingman Coalescent

Paul F. Slade
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Paul F. Slade: Computational Biology and Bioinformatics Unit, Research School of Biology, R.N. Robertson Building 46, Australian National University, Canberra, ACT 0200, Australia

Mathematics, 2018, vol. 6, issue 5, 1-27

Abstract: Kingman’s coalescent process is a mathematical model of genealogy in which only pairwise common ancestry may occur. Inter-arrival times between successive coalescence events have a negative exponential distribution whose rate equals the combinatorial term ( n 2 ) where n denotes the number of lineages present in the genealogy. These two standard constraints of Kingman’s coalescent, obtained in the limit of a large population size, approximate the exact ancestral process of Wright-Fisher or Moran models under appropriate parameterization. Calculation of coalescence event probabilities with higher accuracy quantifies the dependence of sample and population sizes that adhere to Kingman’s coalescent process. The convention that probabilities of leading order N ? 2 are negligible provided n ? N is examined at key stages of the mathematical derivation. Empirically, expected genealogical parity of the single-pair restricted Wright-Fisher haploid model exceeds 99% where n ? 1 2 N 3 ; similarly, per expected interval where n ? 1 2 N / 6 . The fractional cubic root criterion is practicable, since although it corresponds to perfect parity and to an extent confounds identifiability it also accords with manageable conditional probabilities of multi-coalescence.

Keywords: Markov chain; multiple coalescence; transition probability; Wright-Fisher model (search for similar items in EconPapers)
JEL-codes: C (search for similar items in EconPapers)
Date: 2018
References: View references in EconPapers View complete reference list from CitEc
Citations: View citations in EconPapers (1)

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