Response of Soil Bacterial Community to Application of Organic and Inorganic Phosphate Based Fertilizers under Vicia faba L. Cultivation at Two Different Phenological Stages

Shamina Imran Pathan, Silvia Scibetta, Chiara Grassi, Giacomo Pietramellara, Simone Orlandini, Maria Teresa Ceccherini and Marco Napoli
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Shamina Imran Pathan: Department of Agriculture, Food, Environment and Forestry, University of Florence, Piazzale delle Cascine 28, 50144 Florence, Italy
Silvia Scibetta: Department of Agricultural Sciences, Mediterranean University of Reggio Calabria, Feo di Vito, 89124 Reggio Calabria, Italy
Chiara Grassi: Department of Agriculture, Food, Environment and Forestry, University of Florence, Piazzale delle Cascine 28, 50144 Florence, Italy
Giacomo Pietramellara: Department of Agriculture, Food, Environment and Forestry, University of Florence, Piazzale delle Cascine 28, 50144 Florence, Italy
Simone Orlandini: Department of Agriculture, Food, Environment and Forestry, University of Florence, Piazzale delle Cascine 28, 50144 Florence, Italy
Maria Teresa Ceccherini: Department of Agriculture, Food, Environment and Forestry, University of Florence, Piazzale delle Cascine 28, 50144 Florence, Italy
Marco Napoli: Department of Agriculture, Food, Environment and Forestry, University of Florence, Piazzale delle Cascine 28, 50144 Florence, Italy

Sustainability, 2020, vol. 12, issue 22, 1-20

Abstract: It is essential to investigate to which extent and how specifically soil–plant–microbe interactions can be conditioned by different agricultural practices. Legumes such as Vicia faba is one of the essential functional group in intercropping and crop rotations due to its higher N fixing capacity. Hence, it is important to study the living microbial community of this legume. Further, it is also expected that fluctuations in soil microbial diversity and composition could be complemented by plant phenological stages and different fertilizer amendments. Thus, we investigated bacterial community composition in soil treated with phosphate-based inorganic and organic fertilizers, in the presence of Vicia faba plants at flowering and fruiting time using NGS 16S rRNA gene amplicon sequencing. Further, the evaluation of plant biomass parameters under different fertilizer treatments was also carried out. The presence of the Vicia faba plant increased the abundance of N fixing bacterial such as Bardyrhizobium , Microvirga (Rhizobiales), Arthrobacter , and Psuedoarthrobacter (Actinomycetales) in soil. Fluctuation in composition and diversity of bacterial community was further supplemented by plant phenological stages. These alterations could be due to changes that occurred in the plant nutrient requirement and varied root exudation patterns at a specific phenological stage. Further, fertilizer treatments also have a profound effect on the diversity and structure of the bacterial community. Organic fertilizers, especially vegetable tanned leather waste (VTLW), have a stronger effect on the composition and diversity of bacterial community compared to inorganic fertilizer (PT—triple superphosphate). Alpha-diversity was significantly decreased by both organic and inorganic amendments, especially a species evenness because each fertilizer tends to stimulate the growth of distinctive microbes that dominated the community of amended soil. Proteobacteria, Actinobacteria, and Cyanobacteria were the most abundant phyla, and Chelatococcus , Cyanobacteria , Sphingomonas , and Microvirga were a most abundant genus that contributed most in co-occurrence pattern, which suggests that these generalists are adapted to a variety of environments. These indicate that plant presence was a key, dominating factor, followed by fertilizers and time, in affecting soil bacterial diversity and composition. Plant recruits system (fertilization and time) -specific taxa due to differences in available nutrients and energy sources among different treatments during different growth stages. Further, fertilizer treatments did not have a stronger effect on plant production as compared to the effect on microbial community, which highlights that organic fertilizers did not tend to increase plant production. Thus, organic and inorganic amendments with matched macronutrients could have a similar impact on crop yields.

Keywords: 16S rRNA sequencing; organic fertilization; leguminous; sustainable agriculture (search for similar items in EconPapers)
JEL-codes: O13 Q Q0 Q2 Q3 Q5 Q56 (search for similar items in EconPapers)
Date: 2020
References: View references in EconPapers View complete reference list from CitEc
Citations: View citations in EconPapers (2)

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