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RNA is a critical element for the sizing and the composition of phase-separated RNA–protein condensates

Marina Garcia-Jove Navarro, Shunnichi Kashida, Racha Chouaib, Sylvie Souquere, Gérard Pierron, Dominique Weil and Zoher Gueroui ()
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Marina Garcia-Jove Navarro: PSL University, Sorbonne Université, CNRS
Shunnichi Kashida: PSL University, Sorbonne Université, CNRS
Racha Chouaib: Sorbonne Université, CNRS, Institut de Biologie Paris-Seine (IBPS), Laboratoire de Biologie du Développement
Sylvie Souquere: CNRS UMR-9196, Institut Gustave Roussy
Gérard Pierron: CNRS UMR-9196, Institut Gustave Roussy
Dominique Weil: Sorbonne Université, CNRS, Institut de Biologie Paris-Seine (IBPS), Laboratoire de Biologie du Développement
Zoher Gueroui: PSL University, Sorbonne Université, CNRS

Nature Communications, 2019, vol. 10, issue 1, 1-13

Abstract: Abstract Liquid–liquid phase separation is thought to be a key organizing principle in eukaryotic cells to generate highly concentrated dynamic assemblies, such as the RNP granules. Numerous in vitro approaches have validated this model, yet a missing aspect is to take into consideration the complex molecular mixture and promiscuous interactions found in vivo. Here we report the versatile scaffold ArtiG to generate concentration-dependent RNA–protein condensates within living cells, as a bottom-up approach to study the impact of co-segregated endogenous components on phase separation. We demonstrate that intracellular RNA seeds the nucleation of the condensates, as it provides molecular cues to locally coordinate the formation of endogenous high-order RNP assemblies. Interestingly, the co-segregation of intracellular components ultimately impacts the size of the phase-separated condensates. Thus, RNA arises as an architectural element that can influence the composition and the morphological outcome of the condensate phases in an intracellular context.

Date: 2019
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DOI: 10.1038/s41467-019-11241-6

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