Go Get Data (GGD) is a framework that facilitates reproducible access to genomic data

Michael J. Cormier, Jonathan R. Belyeu, Brent S. Pedersen, Joseph Brown, Johannes Köster and Aaron R. Quinlan ()
Additional contact information
Michael J. Cormier: University of Utah
Jonathan R. Belyeu: University of Utah
Brent S. Pedersen: University of Utah
Joseph Brown: University of Utah
Johannes Köster: University of Duisburg-Essen
Aaron R. Quinlan: University of Utah

Nature Communications, 2021, vol. 12, issue 1, 1-6

Abstract: Abstract The rapid increase in the amount of genomic data provides researchers with an opportunity to integrate diverse datasets and annotations when addressing a wide range of biological questions. However, genomic datasets are deposited on different platforms and are stored in numerous formats from multiple genome builds, which complicates the task of collecting, annotating, transforming, and integrating data as needed. Here, we developed Go Get Data (GGD) as a fast, reproducible approach to installing standardized data recipes. GGD is available on Github ( https://gogetdata.github.io/ ), is extendable to other data types, and can streamline the complexities typically associated with data integration, saving researchers time and improving research reproducibility.

Date: 2021
References: Add references at CitEc
Citations:

Downloads: (external link)
https://www.nature.com/articles/s41467-021-22381-z Abstract (text/html)

Related works:
This item may be available elsewhere in EconPapers: Search for items with the same title.

Export reference: BibTeX RIS (EndNote, ProCite, RefMan) HTML/Text

Persistent link: https://EconPapers.repec.org/RePEc:nat:natcom:v:12:y:2021:i:1:d:10.1038_s41467-021-22381-z

Ordering information: This journal article can be ordered from
https://www.nature.com/ncomms/

DOI: 10.1038/s41467-021-22381-z

Access Statistics for this article

Nature Communications is currently edited by Nathalie Le Bot, Enda Bergin and Fiona Gillespie

More articles in Nature Communications from Nature
Bibliographic data for series maintained by Sonal Shukla () and Springer Nature Abstracting and Indexing ().