Time-resolved β-lactam cleavage by L1 metallo-β-lactamase

M. Wilamowski, D. A. Sherrell, Y. Kim, A. Lavens, R. W. Henning, K. Lazarski, A. Shigemoto, M. Endres, N. Maltseva, G. Babnigg, S. C. Burdette, V. Srajer and A. Joachimiak ()
Additional contact information
M. Wilamowski: University of Chicago
D. A. Sherrell: Argonne National Laboratory
Y. Kim: University of Chicago
A. Lavens: Argonne National Laboratory
R. W. Henning: University of Chicago
K. Lazarski: Argonne National Laboratory
A. Shigemoto: Worcester Polytechnic Institute
M. Endres: University of Chicago
N. Maltseva: University of Chicago
G. Babnigg: University of Chicago
S. C. Burdette: Worcester Polytechnic Institute
V. Srajer: University of Chicago
A. Joachimiak: University of Chicago

Nature Communications, 2022, vol. 13, issue 1, 1-12

Abstract: Abstract Serial x-ray crystallography can uncover binding events, and subsequent chemical conversions occurring during enzymatic reaction. Here, we reveal the structure, binding and cleavage of moxalactam antibiotic bound to L1 metallo-β-lactamase (MBL) from Stenotrophomonas maltophilia. Using time-resolved serial synchrotron crystallography, we show the time course of β-lactam hydrolysis and determine ten snapshots (20, 40, 60, 80, 100, 150, 300, 500, 2000 and 4000 ms) at 2.20 Å resolution. The reaction is initiated by laser pulse releasing Zn2+ ions from a UV-labile photocage. Two metal ions bind to the active site, followed by binding of moxalactam and the intact β-lactam ring is observed for 100 ms after photolysis. Cleavage of β-lactam is detected at 150 ms and the ligand is significantly displaced. The reaction product adjusts its conformation reaching steady state at 2000 ms corresponding to the relaxed state of the enzyme. Only small changes are observed in the positions of Zn2+ ions and the active site residues. Mechanistic details captured here can be generalized to other MBLs.

Date: 2022
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DOI: 10.1038/s41467-022-35029-3

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