Nucleotide binding halts diffusion of the eukaryotic replicative helicase during activation

Daniel Ramírez Montero, Humberto Sánchez, Edo Veen, Theo Laar, Belén Solano, John F. X. Diffley () and Nynke H. Dekker ()
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Daniel Ramírez Montero: Delft University of Technology
Humberto Sánchez: Delft University of Technology
Edo Veen: Delft University of Technology
Theo Laar: Delft University of Technology
Belén Solano: Delft University of Technology
John F. X. Diffley: Francis Crick Institute
Nynke H. Dekker: Delft University of Technology

Nature Communications, 2023, vol. 14, issue 1, 1-15

Abstract: Abstract The eukaryotic replicative helicase CMG centrally orchestrates the replisome and leads the way at the front of replication forks. Understanding the motion of CMG on the DNA is therefore key to our understanding of DNA replication. In vivo, CMG is assembled and activated through a cell-cycle-regulated mechanism involving 36 polypeptides that has been reconstituted from purified proteins in ensemble biochemical studies. Conversely, single-molecule studies of CMG motion have thus far relied on pre-formed CMG assembled through an unknown mechanism upon overexpression of individual constituents. Here, we report the activation of CMG fully reconstituted from purified yeast proteins and the quantification of its motion at the single-molecule level. We observe that CMG can move on DNA in two ways: by unidirectional translocation and by diffusion. We demonstrate that CMG preferentially exhibits unidirectional translocation in the presence of ATP, whereas it preferentially exhibits diffusive motion in the absence of ATP. We also demonstrate that nucleotide binding halts diffusive CMG independently of DNA melting. Taken together, our findings support a mechanism by which nucleotide binding allows newly assembled CMG to engage with the DNA within its central channel, halting its diffusion and facilitating the initial DNA melting required to initiate DNA replication.

Date: 2023
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DOI: 10.1038/s41467-023-37093-9

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