Throwing and manipulating and cheating with a DNA nano-dice
Xiaochen Tang,
Tianshu Chen,
Wenxing Li,
Dongsheng Mao,
Chenbin Liu,
Qi Wu,
Nan Huang,
Song Hu,
Fenyong Sun (),
Qiuhui Pan () and
Xiaoli Zhu ()
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Xiaochen Tang: Shanghai Jiao Tong University
Tianshu Chen: Shanghai Jiao Tong University
Wenxing Li: Shanghai Tenth People’s Hospital of Tongji University
Dongsheng Mao: Shanghai Tenth People’s Hospital of Tongji University
Chenbin Liu: Shanghai Tenth People’s Hospital of Tongji University
Qi Wu: Shanghai Tenth People’s Hospital of Tongji University
Nan Huang: Shanghai Tenth People’s Hospital of Tongji University
Song Hu: Shanghai Tenth People’s Hospital of Tongji University
Fenyong Sun: Shanghai Tenth People’s Hospital of Tongji University
Qiuhui Pan: Shanghai Jiao Tong University
Xiaoli Zhu: Shanghai Tenth People’s Hospital of Tongji University
Nature Communications, 2023, vol. 14, issue 1, 1-13
Abstract:
Abstract Artificial molecular machines have captured the imagination of researchers, given their clear potential to mimic and influence human life. Key to behavior simulation is to reproduce the specific properties of physical or abstract systems. Dice throwing, as a stochastic model, is commonly used for result judgment or plan decision in real life. In this perspective we utilize DNA cube framework for the design of a dice device at the nanoscale to reproduce probabilistic events in different situations: equal probability, high probability, and low probability. We first discuss the randomness of DNA cube, or dice, adsorbing on graphene oxide, or table, and then explore a series of events that change the probability through the way in which the energy released from entropy-driven strand displacement reactions or changes in intermolecular forces. As such, the DNA nano-dice system provides guideline and possibilities for the design, engineering, and quantification of behavioral probability simulation, a currently emerging area of molecular simulation research.
Date: 2023
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DOI: 10.1038/s41467-023-38164-7
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