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Dynamic inter-domain transformations mediate the allosteric regulation of human 5, 10-methylenetetrahydrofolate reductase

Linnea K. M. Blomgren, Melanie Huber, Sabrina R. Mackinnon, Céline Bürer, Arnaud Baslé, Wyatt W. Yue (), D. Sean Froese () and Thomas J. McCorvie ()
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Linnea K. M. Blomgren: University of Zürich
Melanie Huber: University of Zürich
Sabrina R. Mackinnon: Newcastle University
Céline Bürer: University of Zürich
Arnaud Baslé: Newcastle University
Wyatt W. Yue: Newcastle University
D. Sean Froese: University of Zürich
Thomas J. McCorvie: Newcastle University

Nature Communications, 2024, vol. 15, issue 1, 1-13

Abstract: Abstract 5,10-methylenetetrahydrofolate reductase (MTHFR) commits folate-derived one-carbon units to generate the methyl-donor s-adenosyl-l-methionine (SAM). Eukaryotic MTHFR appends to the well-conserved catalytic domain (CD) a unique regulatory domain (RD) that confers feedback inhibition by SAM. Here we determine the cryo-electron microscopy structures of human MTHFR bound to SAM and its demethylated product s-adenosyl-l-homocysteine (SAH). In the active state, with the RD bound to a single SAH, the CD is flexible and exposes its active site for catalysis. However, in the inhibited state the RD pocket is remodelled, exposing a second SAM-binding site that was previously occluded. Dual-SAM bound MTHFR demonstrates a substantially rearranged inter-domain linker that reorients the CD, inserts a loop into the active site, positions Tyr404 to bind the cofactor FAD, and blocks substrate access. Our data therefore explain the long-distance regulatory mechanism of MTHFR inhibition, underpinned by the transition between dual-SAM and single-SAH binding in response to cellular methylation status.

Date: 2024
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DOI: 10.1038/s41467-024-47174-y

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