Explainable chemical artificial intelligence from accurate machine learning of real-space chemical descriptors

Miguel Gallegos, Valentin Vassilev-Galindo, Igor Poltavsky, Ángel Martín Pendás () and Alexandre Tkatchenko ()
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Miguel Gallegos: University of Oviedo
Valentin Vassilev-Galindo: IMDEA Materials Institute
Igor Poltavsky: University of Luxembourg
Ángel Martín Pendás: University of Oviedo
Alexandre Tkatchenko: University of Luxembourg

Nature Communications, 2024, vol. 15, issue 1, 1-13

Abstract: Abstract Machine-learned computational chemistry has led to a paradoxical situation in which molecular properties can be accurately predicted, but they are difficult to interpret. Explainable AI (XAI) tools can be used to analyze complex models, but they are highly dependent on the AI technique and the origin of the reference data. Alternatively, interpretable real-space tools can be employed directly, but they are often expensive to compute. To address this dilemma between explainability and accuracy, we developed SchNet4AIM, a SchNet-based architecture capable of dealing with local one-body (atomic) and two-body (interatomic) descriptors. The performance of SchNet4AIM is tested by predicting a wide collection of real-space quantities ranging from atomic charges and delocalization indices to pairwise interaction energies. The accuracy and speed of SchNet4AIM breaks the bottleneck that has prevented the use of real-space chemical descriptors in complex systems. We show that the group delocalization indices, arising from our physically rigorous atomistic predictions, provide reliable indicators of supramolecular binding events, thus contributing to the development of Explainable Chemical Artificial Intelligence (XCAI) models.

Date: 2024
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DOI: 10.1038/s41467-024-48567-9

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