Cryo-EM unveils kinesin KIF1A’s processivity mechanism and the impact of its pathogenic variant P305L

Matthieu P. M. H. Benoit (), Lu Rao, Ana B. Asenjo, Arne Gennerich () and Hernando Sosa ()
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Matthieu P. M. H. Benoit: Albert Einstein College of Medicine
Lu Rao: Albert Einstein College of Medicine
Ana B. Asenjo: Albert Einstein College of Medicine
Arne Gennerich: Albert Einstein College of Medicine
Hernando Sosa: Albert Einstein College of Medicine

Nature Communications, 2024, vol. 15, issue 1, 1-18

Abstract: Abstract Mutations in the microtubule-associated motor protein KIF1A lead to severe neurological conditions known as KIF1A-associated neurological disorders (KAND). Despite insights into its molecular mechanism, high-resolution structures of KIF1A-microtubule complexes remain undefined. Here, we present 2.7-3.5 Å resolution structures of dimeric microtubule-bound KIF1A, including the pathogenic P305L mutant, across various nucleotide states. Our structures reveal that KIF1A binds microtubules in one- and two-heads-bound configurations, with both heads exhibiting distinct conformations with tight inter-head connection. Notably, KIF1A’s class-specific loop 12 (K-loop) forms electrostatic interactions with the C-terminal tails of both α- and β-tubulin. The P305L mutation does not disrupt these interactions but alters loop-12’s conformation, impairing strong microtubule-binding. Structure-function analysis reveals the K-loop and head-head coordination as major determinants of KIF1A’s superprocessive motility. Our findings advance the understanding of KIF1A’s molecular mechanism and provide a basis for developing structure-guided therapeutics against KAND.

Date: 2024
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DOI: 10.1038/s41467-024-48720-4

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