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ATP biosensor reveals microbial energetic dynamics and facilitates bioproduction

Xinyue Mu, Trent D. Evans and Fuzhong Zhang ()
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Xinyue Mu: Washington University in St. Louis
Trent D. Evans: Washington University in St. Louis
Fuzhong Zhang: Washington University in St. Louis

Nature Communications, 2024, vol. 15, issue 1, 1-10

Abstract: Abstract Adenosine-5’-triphosphate (ATP), the primary energy currency in cellular processes, drives metabolic activities and biosynthesis. Despite its importance, understanding intracellular ATP dynamics’ impact on bioproduction and exploiting it for enhanced bioproduction remains largely unexplored. Here, we harness an ATP biosensor to dissect ATP dynamics across different growth phases and carbon sources in multiple microbial strains. We find transient ATP accumulations during the transition from exponential to stationary growth phases in various conditions, coinciding with fatty acid (FA) and polyhydroxyalkanoate (PHA) production in Escherichia coli and Pseudomonas putida, respectively. We identify carbon sources (acetate for E. coli, oleate for P. putida) that elevate steady-state ATP levels and boost FA and PHA production. Moreover, we employ ATP dynamics as a diagnostic tool to assess metabolic burden, revealing bottlenecks that limit limonene bioproduction. Our results not only elucidate the relationship between ATP dynamics and bioproduction but also showcase its value in enhancing bioproduction in various microbial species.

Date: 2024
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DOI: 10.1038/s41467-024-49579-1

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