Structural insights into epitope-paratope interactions of a monoclonal antibody targeting CEACAM5-expressing tumors

Anand Kumar, Francis Duffieux, Marie Gagnaire, Chiara Rapisarda, Thomas Bertrand and Alexey Rak ()
Additional contact information
Anand Kumar: Sanofi R&D
Francis Duffieux: Sanofi R&D
Marie Gagnaire: Sanofi R&D
Chiara Rapisarda: Sanofi R&D
Thomas Bertrand: Sanofi R&D
Alexey Rak: Sanofi R&D

Nature Communications, 2024, vol. 15, issue 1, 1-9

Abstract: Abstract Carcinoembryonic antigen-related cell adhesion molecules (CEACAMs) are overexpressed in some tumor types. The antibody-drug conjugate tusamitamab ravtansine specifically recognizes the A3-B3 domains of human CEACAM5 (hCEACAM5). To understand this specificity, here we map the epitope-paratope interface between the A3-B3 domains of hCEACAM5 (hCEACAM5A3-B3) and the antigen-binding fragment of tusamitamab (tusa Fab). We use hydrogen/deuterium exchange mass spectrometry to identify the tusa Fab paratope, which involves heavy chain (HC) residues 101–109 and light chain residues 48–54 and 88–104. Using surface plasmon resonance, we demonstrate that alanine variants of HC residues 96–108 abolish binding to hCEACAM5, suggesting that these residues are critical for tusa-Fab–antigen complex formation. The cryogenic electron microscopy structure of the hCEACAM5A3-B3- tusa Fab complex (3.11 Å overall resolution) reveals a discontinuous epitope involving residues in the A3-B3 domains and an N-linked mannose at residue Asn612. Conformational constraints on the epitope-paratope interface enable tusamitamab to target hCEACAM5A3-B3 and distinguish CEACAM5 from other CEACAMs.

Date: 2024
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DOI: 10.1038/s41467-024-53746-9

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