Numerous rRNA molecules form the apicomplexan mitoribosome via repurposed protein and RNA elements

Shikha Shikha, Victor Tobiasson, Mariana Ferreira Silva, Jana Ovciarikova, Dario Beraldi, Alexander Mühleip () and Lilach Sheiner ()
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Shikha Shikha: University of Glasgow
Victor Tobiasson: National Library of Medicine
Mariana Ferreira Silva: University of Glasgow
Jana Ovciarikova: University of Glasgow
Dario Beraldi: University of Glasgow
Alexander Mühleip: University of Glasgow
Lilach Sheiner: University of Glasgow

Nature Communications, 2025, vol. 16, issue 1, 1-13

Abstract: Abstract Mitochondrial ribosomes (mitoribosomes) are essential, and their function of synthesising mitochondrial proteins is universal. The core of almost all mitoribosomes is formed from a small number of long and self-folding rRNA molecules. In contrast, the mitoribosome of the apicomplexan parasite Toxoplasma gondii assembles from over 50 extremely short rRNA molecules. Here, we use cryo-EM to discover the features that enable this unusual mitoribosome to perform its function. We reveal that poly-A tails added to rRNA molecules are integrated into the ribosome, and we demonstrate their essentiality for mitoribosome formation and for parasite survival. This is a distinct function for poly-A tails, which are otherwise known primarily as stabilisers of messenger RNAs. Furthermore, while ribosomes typically consist of unique rRNA sequences, here nine sequences are used twice, each copy integrated in a different mitoribosome domain, revealing one of the mechanisms enabling the extreme mitochondrial genome reduction characteristic to Apicomplexa and to a large group of related microbial eukaryotes. Finally, several transcription factor-like proteins are repurposed to compensate for reduced or lost critical ribosomal domains, including members of the ApiAP2 family thus far considered to be DNA-binding transcription factors.

Date: 2025
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DOI: 10.1038/s41467-025-56057-9

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