New insights on angiosperm crown age based on Bayesian node dating and skyline fossilized birth-death approaches

Xiaoya Ma, Chi Zhang, Lingxiao Yang, S. Blair Hedges and Bojian Zhong ()
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Xiaoya Ma: Nanjing Normal University
Chi Zhang: Chinese Academy of Sciences
Lingxiao Yang: Nanjing Normal University
S. Blair Hedges: Temple University
Bojian Zhong: Nanjing Normal University

Nature Communications, 2025, vol. 16, issue 1, 1-13

Abstract: Abstract Despite considerable work in recent years, pinpointing the time when angiosperms originated has been challenging. However, the rapid development of molecular clock methodology has provided new tools to resolve this conundrum. In particular, the fossilized birth-death model establishes a rich interplay between molecules and stratigraphy by incorporating fossils explicitly into dating analyses. In this study, we apply Bayesian node dating and the skyline fossilized birth-death model, which differ in how the calibration is applied, to estimate the crown age of angiosperms. Node dating analyses with different calibration strategies show that the posterior distribution is strongly constrained by the effective prior at the node of crown angiosperms, dominated by the maximum age constraint. Using the skyline fossilized birth-death model, we reveal that assigning different priors for origin time resulted in similar crown ages for angiosperms. Moreover, the oldest fossils play a significant role in time estimates, and the dating results are robust to sampling assumptions of extant taxa. Our dating analyses indicate a largely Triassic crown age (255–202 Ma) for angiosperms, the period when mammals, dinosaurs, and squamate reptiles first appeared, and highlight the potential of morphological data to redefine the timeline of angiosperms.

Date: 2025
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DOI: 10.1038/s41467-025-57687-9

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