Deep learning network for NMR spectra reconstruction in time-frequency domain and quality assessment

Yao Luo, Wenhan Chen, Zhenhua Su, Xiaoqi Shi, Jie Luo, Xiaobo Qu, Zhong Chen and Yanqin Lin ()
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Yao Luo: Xiamen University
Wenhan Chen: Xiamen University
Zhenhua Su: Xiamen University
Xiaoqi Shi: Xiamen University
Jie Luo: Xiamen University
Xiaobo Qu: Xiamen University
Zhong Chen: Xiamen University
Yanqin Lin: Xiamen University

Nature Communications, 2025, vol. 16, issue 1, 1-11

Abstract: Abstract High-quality nuclear magnetic resonance (NMR) spectra can be rapidly acquired by combining non-uniform sampling techniques (NUS) with reconstruction algorithms. However, current deep learning (DL) based reconstruction methods focus only on single-domain reconstruction (time or frequency domain), leading to drawbacks like peak loss and artifact peaks and ultimately failing to achieve optimal performance. Moreover, the lack of fully sampled spectra makes it difficult, even impossible, to determine the quality of reconstructed spectra, presenting challenges in the practical applications of NUS. In this study, a joint time-frequency domain deep learning network, referred to as JTF-Net, is proposed. It effectively combines time domain and frequency domain features, exhibiting better reconstruction performance on protein spectra across various dimensions compared to traditional algorithms and single-domain DL methods. In addition, the reference-free quality assessment metric, denoted as REconstruction QUalIty assuRancE Ratio (REQUIRER), is proposed base on an established quality space in the field of NMR spectral reconstruction. The metric is capable of evaluating the quality of reconstructed NMR spectra without the fully sampled spectra, making it more suitable for practical applications.

Date: 2025
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DOI: 10.1038/s41467-025-57721-w

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