Preparation of oxygen-sensitive proteins for high-resolution cryoEM structure determination using blot-free vitrification

Brian D. Cook, Sarah M. Narehood, Kelly L. McGuire, Yizhou Li, F. Akif Tezcan and Mark A. Herzik ()
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Brian D. Cook: University of California San Diego
Sarah M. Narehood: University of California San Diego
Kelly L. McGuire: University of California San Diego
Yizhou Li: University of California San Diego
F. Akif Tezcan: University of California San Diego
Mark A. Herzik: University of California San Diego

Nature Communications, 2025, vol. 16, issue 1, 1-11

Abstract: Abstract High-quality grid preparation for single-particle cryogenic electron microscopy (cryoEM) remains a bottleneck for routinely obtaining high-resolution structures. The issues that arise from traditional grid preparation workflows are particularly exacerbated for oxygen-sensitive proteins, including metalloproteins, whereby oxygen-induced damage and alteration of oxidation states can result in protein inactivation, denaturation, and/or aggregation. Indeed, 99% of the current structures in the EMBD were prepared aerobically and limited successes for anaerobic cryoEM grid preparation exist. Current practices for anaerobic grid preparation involve a vitrification device located in an anoxic chamber, which presents significant challenges including temperature and humidity control, optimization of freezing conditions, costs for purchase and operation, as well as accessibility. Here, we present a streamlined approach that allows for the vitrification of oxygen-sensitive proteins in reduced states using an automated blot-free grid vitrification device – the SPT Labtech chameleon. This robust workflow allows for high-resolution structure determination of dynamic, oxygen-sensitive proteins, of varying complexity and molecular weight.

Date: 2025
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DOI: 10.1038/s41467-025-58243-1

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