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Enzymatic Birch reduction via hydrogen atom transfer at [4Fe-4S]-OH2 and [8Fe-9S] clusters

Jonathan Fuchs, Unai Fernández-Arévalo, Ulrike Demmer, Eduardo Díaz, G. Matthias Ullmann, Antonio J. Pierik, Ulrich Ermler and Matthias Boll ()
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Jonathan Fuchs: University of Freiburg
Unai Fernández-Arévalo: Centro de Investigaciones Biológicas Margarita Salas-CSIC
Ulrike Demmer: Max Planck Institute of Biophysics
Eduardo Díaz: Centro de Investigaciones Biológicas Margarita Salas-CSIC
G. Matthias Ullmann: University of Bayreuth
Antonio J. Pierik: RPTU Kaiserslautern-Landau
Ulrich Ermler: Max Planck Institute of Biophysics
Matthias Boll: University of Freiburg

Nature Communications, 2025, vol. 16, issue 1, 1-11

Abstract: Abstract The alkali metal- and ammonia-dependent Birch reduction is the classical synthetic method for achieving dihydro additions to arenes, typically yielding 1,4-cyclodienes. A mild biological alternative to this process are 1,5-dienoyl-coenzyme A (CoA)-forming class I and II benzoyl-CoA reductases (BCRs), widely abundant key enzymes in the biodegradation of aromatic compounds at anoxic environments. To obtain a comprehensive mechanistic understanding of class I BCR catalysis, we produced the active site subunits from a denitrifying bacterium and determined the X-ray structure of its substrate and product complexes at 1.4 Å revealing non-canonical double-cubane [8Fe-9S] and active site aqua-[4Fe-4S] clusters. Together with kinetic, spectroscopic and QM/MM studies, we provide evidence for a radical mechanism with a [4Fe-4S] cluster-bound water molecule acting as hydrogen atom and electron donor at potentials beyond the biological redox window. An analogous Birch-like radical mechanism is applied by class II BCRs with the catalytic water bound to a tungsten-bis-metallopterin cofactor. The use of activated, metal-bound water ligands as hydrogen atom donor serves as a basic blueprint for future enzymatic or biomimetic Birch reduction processes.

Date: 2025
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DOI: 10.1038/s41467-025-58418-w

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