LLPS REDIFINE allows the biophysical characterization of multicomponent condensates without tags or labels

Mihajlo Novakovic (), Yaning Han, Nina C. Kathe, Yinan Ni, Leonidas Emmanouilidis () and Frédéric H.-T. Allain ()
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Mihajlo Novakovic: ETH Zurich
Yaning Han: ETH Zurich
Nina C. Kathe: ETH Zurich
Yinan Ni: ETH Zurich
Leonidas Emmanouilidis: ETH Zurich
Frédéric H.-T. Allain: ETH Zurich

Nature Communications, 2025, vol. 16, issue 1, 1-14

Abstract: Abstract Liquid-liquid phase separation (LLPS) phenomenon plays a vital role in multiple cell biology processes, providing a mechanism to concentrate biomolecules and promote cellular reactions locally. Despite its significance in biology, there is a lack of conventional techniques suitable for studying biphasic samples in their biologically relevant form. Here, we present a label-free and non-invasive approach to characterize biomolecular condensates termed LLPS REstricted DIFusion of INvisible speciEs (REDIFINE). Relying on diffusion NMR measurements, REDIFINE exploits the exchange dynamics between molecules in the condensed and dispersed phases to determine not only diffusion constants and the fractions in both phases but also the average radius of the condensed droplets and the exchange rate between the phases. Observing proteins, RNAs, water, as well as small molecules, and even assessing the concentrations of biomolecules in both phases, REDIFINE analysis allows a rapid biophysical characterization of multicomponent condensates which is important to understand their functional roles. In comparing multiple systems, REDIFINE reveals that folded RNA-binding proteins form smaller and more dynamic droplets compared to the disordered ones.

Date: 2025
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DOI: 10.1038/s41467-025-59759-2

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