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The RNA-binding protein RRP1 brakes macrophage one-carbon metabolism to suppress autoinflammation

Yumei Zhou, Mengxuan Li, Ke Jin, Mingyue Wen, Hua Qin, Yue Xu, Chunmei Wang, Xuan Zhang and Xuetao Cao ()
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Yumei Zhou: Chinese Academy of Medical Sciences
Mengxuan Li: Navy Medical University
Ke Jin: Zhejiang University School of Medicine
Mingyue Wen: Chinese Academy of Medical Sciences
Hua Qin: Nankai University
Yue Xu: Chinese Academy of Medical Sciences
Chunmei Wang: Chinese Academy of Medical Sciences
Xuan Zhang: Chinese Academy of Medical Sciences
Xuetao Cao: Chinese Academy of Medical Sciences

Nature Communications, 2025, vol. 16, issue 1, 1-18

Abstract: Abstract RNA-binding proteins (RBP) are important for the initiation and resolution of inflammation, so better understanding of RBP-RNA interactions and their crosstalk with metabolism may provide alternate targets to controlling inflammation. Here we establish global RNA-protein interactome purification (GRPIp) to profile the RBP landscape in inflammatory primary macrophages and identify ribosomal RNA processing 1 (RRP1) as a suppressor of inflammatory innate responses. Mechanistically, RRP1 binds nuclear thymidylate synthetase (Tyms) transcript and decreases TYMS expression post-transcriptionally in inflammatory macrophages, consequently suppressing folate metabolism cycle and inhibiting one-carbon metabolism-driven inflammation. Myeloid-specific RRP1-deficient mice develop severe experimental arthritis with increased pro-inflammatory cytokines and immunologic injury. Meanwhile, in patients with rheumatoid arthritis, RRP1 expression in peripheral blood monocytes negatively correlates with TYMS expression and serum IL-1β levels. Our results thus suggest that RRP1 acts as an anti-inflammatory factor through braking one-carbon metabolism post-transcriptionally, thereby implicating potential strategies for controlling autoinflammation.

Date: 2025
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DOI: 10.1038/s41467-025-62173-3

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