PLOS Biology

2003 - 2022

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Volume 20, issue 3, 2022

Cortical softening elicits zygotic contractility during mouse preimplantation development pp. 1-23

Özge Özgüç, Ludmilla de Plater, Varun Kapoor, Anna Francesca Tortorelli, Andrew G Clark and Jean-Léon Maître

The effect of apathy and compulsivity on planning and stopping in sequential decision-making pp. 1-38

Jacqueline Scholl, Hailey A Trier, Matthew F S Rushworth and Nils Kolling

Correction of scientific literature: Too little, too late! pp. 1-4

Lonni Besançon, Elisabeth Bik, James Heathers and Gideon Meyerowitz-Katz

Systematically assessing microbiome–disease associations identifies drivers of inconsistency in metagenomic research pp. 1-18

Braden T Tierney, Yingxuan Tan, Zhen Yang, Bing Shui, Michaela J Walker, Benjamin M Kent, Aleksandar D Kostic and Chirag J Patel

Volume 20, issue 2, 2022

Analysis of 567,758 randomized controlled trials published over 30 years reveals trends in phrases used to discuss results that do not reach statistical significance pp. 1-15

Willem M Otte, Christiaan H Vinkers, Philippe C Habets, David G P van IJzendoorn and Joeri K Tijdink

SARS-CoV-2 antibodies protect against reinfection for at least 6 months in a multicentre seroepidemiological workplace cohort pp. 1-11

Emilie Finch, Rachel Lowe, Stephanie Fischinger, Michael de St Aubin, Sameed M Siddiqui, Diana Dayal, Michael A Loesche, Justin Rhee, Samuel Beger, Yiyuan Hu, Matthew J Gluck, Benjamin Mormann, Mohammad A Hasdianda, Elon R Musk, Galit Alter, Anil S Menon, Eric J Nilles, Adam J Kucharski and on behalf of the CMMID COVID-19 working group and the SpaceX COVID-19 Cohort Collaborative

Examining linguistic shifts between preprints and publications pp. 1-22

David N Nicholson, Vincent Rubinetti, Dongbo Hu, Marvin Thielk, Lawrence E Hunter and Casey S Greene

People’s desire to be in nature and how they experience it are partially heritable pp. 1-16

Chia-chen Chang, Daniel T C Cox, Qiao Fan, Thi Phuong Le Nghiem, Claudia L Y Tan, Rachel Rui Ying Oh, Brenda B Lin, Danielle F Shanahan, Richard A Fuller, Kevin J Gaston and L. Roman Carrasco

Meta-analysis reveals an extreme “decline effect” in the impacts of ocean acidification on fish behavior pp. 1-20

Jeff C Clements, Josefin Sundin, Timothy D Clark and Fredrik Jutfelt

Volume 20, issue 1, 2022

The first six years of meta-research at PLOS Biology pp. 1-4

Roland G Roberts and on behalf of the PLOS Biology Staff Editors

Endogenously produced catecholamines improve the regulatory function of TLR9-activated B cells pp. 1-30

Nadine Honke, Torsten Lowin, Birgit Opgenoorth, Namir Shaabani, Alexander Lautwein, John R Teijaro, Matthias Schneider and Georg Pongratz

Volume 19, issue 12, 2021

Poststroke dendritic arbor regrowth requires the actin nucleator Cobl pp. 1-35

Yuanyuan Ji, Dennis Koch, Jule González Delgado, Madlen Günther, Otto W Witte, Michael M Kessels, Christiane Frahm and Britta Qualmann

Comment on “Indirect Fitness Benefits Enable the Spread of Host Genes Promoting Costly Transfer of Beneficial Plasmids” pp. 1-5

Alastair Jamieson-Lane and Bernd Blasius

Noise increases the correspondence between artificial and human vision pp. 1-4

Jessica A F Thompson

Genome-wide gene expression noise in Escherichia coli is condition-dependent and determined by propagation of noise through the regulatory network pp. 1-22

Arantxa Urchueguía, Luca Galbusera, Dany Chauvin, Gwendoline Bellement, Thomas Julou and Erik van Nimwegen

Noise-trained deep neural networks effectively predict human vision and its neural responses to challenging images pp. 1-27

Hojin Jang, Devin McCormack and Frank Tong

Volume 19, issue 11, 2021

A survey of biomedical journals to detect editorial bias and nepotistic behavior pp. 1-18

Alexandre Scanff, Florian Naudet, Ioana A Cristea, David Moher, Dorothy V M Bishop and Clara Locher

NAMPT-derived NAD+ fuels PARP1 to promote skin inflammation through parthanatos cell death pp. 1-27

Francisco J Martínez-Morcillo, Joaquín Cantón-Sandoval, Francisco J Martínez-Navarro, Isabel Cabas, Idoya Martínez-Vicente, Joy Armistead, Julia Hatzold, Azucena López-Muñoz, Teresa Martínez-Menchón, Raúl Corbalán-Vélez, Jesús Lacal, Matthias Hammerschmidt, José C García-Borrón, Alfonsa García-Ayala, María L Cayuela, Ana B Pérez-Oliva, Diana García-Moreno and Victoriano Mulero

A cloud-based toolbox for the versatile environmental annotation of biodiversity data pp. 1-22

Richard Li, Ajay Ranipeta, John Wilshire, Jeremy Malczyk, Michelle Duong, Robert Guralnick, Adam Wilson and Walter Jetz

iSDAsoil: The first continent-scale soil property map at 30 m resolution provides a soil information revolution for Africa pp. 1-4

Matthew A E Miller, Keith D Shepherd, Bruce Kisitu and Jamie Collinson

The economics of managing evolution pp. 1-14

Troy Day, David A Kennedy, Andrew F Read and David McAdams

From grassroots to global: A blueprint for building a reproducibility network pp. 1-6

Reproducibility Network Steering Committee Uk

Volume 19, issue 10, 2021

Deep learning allows genome-scale prediction of Michaelis constants from structural features pp. 1-21

Alexander Kroll, Martin K M Engqvist, David Heckmann and Martin J Lercher

A field guide to cultivating computational biology pp. 1-14

Gregory P Way, Casey S Greene, Piero Carninci, Benilton S Carvalho, Michiel de Hoon, Stacey Finley, Sara J C Gosline, Kim-Anh Lȇ Cao, Jerry S H Lee, Luigi Marchionni, Nicolas Robine, Suzanne S Sindi, Fabian J Theis, Jean Y H Yang, Anne E Carpenter and Elana J Fertig

A phylogenomic framework for charting the diversity and evolution of giant viruses pp. 1-18

Frank O Aylward, Mohammad Moniruzzaman, Anh D Ha and Eugene V Koonin

Volume 19, issue 9, 2021

Cooperating elephants mitigate competition until the stakes get too high pp. 1-23

Li-Li Li, Joshua M Plotnik, Shang-Wen Xia, Estelle Meaux and Rui-Chang Quan

A 3-year evaluation of preclinicaltrials.eu reveals room for improvement in preregistration of animal studies pp. 1-5

Mira van der Naald, Steven A J Chamuleau, Julia M L Menon, Wim de Leeuw, Judith J de Haan, Dirk J Duncker and Kimberley E Wever

Microplastics and anthropogenic fibre concentrations in lakes reflect surrounding land use pp. 1-18

Andrew J Tanentzap, Samuel Cottingham, Jérémy Fonvielle, Isobel Riley, Lucy M Walker, Samuel G Woodman, Danai Kontou, Christian M Pichler, Erwin Reisner and Laurent Lebreton

Stimulation of the left dorsolateral prefrontal cortex with slow rTMS enhances verbal memory formation pp. 1-21

Mircea van der Plas, Verena Braun, Benjamin Johannes Stauch and Simon Hanslmayr

Twenty steps to ingrain power asymmetry in global health biomedical research pp. 1-4

Iruka N Okeke

Volume 19, issue 8, 2021

Challenges in interpreting cytokine data in COVID-19 affect patient care and management pp. 1-5

Stephen Y Wang, Takehiro Takahashi, Alexander B Pine, William E Damsky, Michael Simonov, Yanhua Zhang, Elizabeth Kieras, Christina C Price, Brett A King, Mark D Siegel, Gary V Desir, Alfred I Lee, Akiko Iwasaki and Hyung J Chun

A flexible framework for multi-particle refinement in cryo-electron tomography pp. 1-16

Alister Burt, Lorenzo Gaifas, Tom Dendooven and Irina Gutsche

Response to “Vast (but avoidable) underestimation of global biodiversity” pp. 1-4

Stilianos Louca, Florent Mazel, Michael Doebeli and Laura Wegener Parfrey

Conjunctive spatial and self-motion codes are topographically organized in the GABAergic cells of the lateral septum pp. 1-36

Suzanne van der Veldt, Guillaume Etter, Coralie-Anne Mosser, Frédéric Manseau and Sylvain Williams

Volume 19, issue 7, 2021

Assessing the replicability of spatial gene expression using atlas data from the adult mouse brain pp. 1-27

Shaina Lu, Cantin Ortiz, Daniel Fürth, Stephan Fischer, Konstantinos Meletis, Anthony Zador and Jesse Gillis

Educating the future generation of researchers: A cross-disciplinary survey of trends in analysis methods pp. 1-23

Taylor Bolt, Jason S Nomi, Danilo Bzdok and Lucina Q Uddin

Heteroresistance to beta-lactam antibiotics may often be a stage in the progression to antibiotic resistance pp. 1-8

Victor I Band and David S Weiss

Viral dynamics of acute SARS-CoV-2 infection and applications to diagnostic and public health strategies pp. 1-17

Stephen M Kissler, Joseph R Fauver, Christina Mack, Scott W Olesen, Caroline Tai, Kristin Y Shiue, Chaney C Kalinich, Sarah Jednak, Isabel M Ott, Chantal B F Vogels, Jay Wohlgemuth, James Weisberger, John DiFiori, Deverick J Anderson, Jimmie Mancell, David D Ho, Nathan D Grubaugh and Yonatan H Grad

A cross-institutional analysis of the effects of broadening trainee professional development on research productivity pp. 1-21

Patrick D Brandt, Susi Sturzenegger Varvayanis, Tracey Baas, Amanda F Bolgioni, Janet Alder, Kimberly A Petrie, Isabel Dominguez, Abigail M Brown, C Abigail Stayart, Harinder Singh, Audra Van Wart, Christine S Chow, Ambika Mathur, Barbara M Schreiber, David A Fruman, Brent Bowden, Christopher A Wiesen, Yvonne M Golightly, Chris E Holmquist, Daniel Arneman, Joshua D Hall, Linda E Hyman, Kathleen L Gould, Roger Chalkley, Patrick J Brennwald and Rebekah L Layton

Don’t let the perfect be the enemy of the good pp. 1-3

Marcus Munafò

Learning from the past to develop data analysis curricula for the future pp. 1-3

Tracey L Weissgerber

IVEN: A quantitative tool to describe 3D cell position and neighbourhood reveals architectural changes in FGF4-treated preimplantation embryos pp. 1-25

Jessica E Forsyth, Ali H Al-Anbaki, Roberto de la Fuente, Nikkinder Modare, Diego Perez-Cortes, Isabel Rivera, Rowena Seaton Kelly, Simon Cotter and Berenika Plusa

Volume 19, issue 6, 2021

Intrinsic connectivity reveals functionally distinct cortico-hippocampal networks in the human brain pp. 1-34

Alexander J Barnett, Walter Reilly, Halle R Dimsdale-Zucker, Eda Mizrak, Zachariah Reagh and Charan Ranganath

Promoting inclusive metrics of success and impact to dismantle a discriminatory reward system in science pp. 1-15

Sarah W Davies, Hollie M Putnam, Tracy Ainsworth, Julia K Baum, Colleen B Bove, Sarah C Crosby, Isabelle M Côté, Anne Duplouy, Robinson W Fulweiler, Alyssa J Griffin, Torrance C Hanley, Tessa Hill, Adriana Humanes, Sangeeta Mangubhai, Anna Metaxas, Laura M Parker, Hanny E Rivera, Nyssa J Silbiger, Nicola S Smith, Ana K Spalding, Nikki Traylor-Knowles, Brooke L Weigel, Rachel M Wright and Amanda E Bates

Atypical and inflexible visual encoding in autism spectrum disorder pp. 1-5

Emily L Isenstein, Woon Ju Park and Duje Tadin

Volume 19, issue 5, 2021

Meta-analysis of variation suggests that embracing variability improves both replicability and generalizability in preclinical research pp. 1-20

Takuji Usui, Malcolm R Macleod, Sarah K McCann, Alistair M Senior and Shinichi Nakagawa

Epidemiology and reporting characteristics of preclinical systematic reviews pp. 1-17

Victoria T Hunniford, Joshua Montroy, Dean A Fergusson, Marc T Avey, Kimberley E Wever, Sarah K McCann, Madison Foster, Grace Fox, Mackenzie Lafreniere, Mira Ghaly, Sydney Mannell, Karolina Godwinska, Avonae Gentles, Shehab Selim, Jenna MacNeil, Lindsey Sikora, Emily S Sena, Matthew J Page, Malcolm Macleod, David Moher and Manoj M Lalu

Cell-level metadata are indispensable for documenting single-cell sequencing datasets pp. 1-10

Sidhant Puntambekar, Jay R Hesselberth, Kent A Riemondy and Rui Fu

Neural oscillations are a start toward understanding brain activity rather than the end pp. 1-12

Keith B Doelling and M Florencia Assaneo

A generation of junior faculty is at risk from the impacts of COVID-19 pp. 1-3

Tiffany Lowe-Power, Louise Dyson and Abigail M Polter

Extracellular DJ-1 induces sterile inflammation in the ischemic brain pp. 1-21

Koutarou Nakamura, Seiichiro Sakai, Jun Tsuyama, Akari Nakamura, Kento Otani, Kumiko Kurabayashi, Yoshiko Yogiashi, Hisao Masai and Takashi Shichita

Individuals with autism spectrum disorder have altered visual encoding capacity pp. 1-21

Jean-Paul Noel, Ling-Qi Zhang, Alan A Stocker and Dora E Angelaki

Volume 19, issue 4, 2021

Quantitative proteome comparison of human hearts with those of model organisms pp. 1-22

Nora Linscheid, Alberto Santos, Pi Camilla Poulsen, Robert W Mills, Kirstine Calloe, Ulrike Leurs, Johan Z Ye, Christian Stolte, Morten B Thomsen, Bo H Bentzen, Pia R Lundegaard, Morten S Olesen, Lars J Jensen, Jesper V Olsen and Alicia Lundby

Farnesyl pyrophosphate is a new danger signal inducing acute cell death pp. 1-25

Jing Chen, Xiaochen Zhang, Liping Li, Xianqiang Ma, Chunxiao Yang, Zhaodi Liu, Chenyang Li, Maria J Fernandez-Cabezudo, Basel K al-Ramadi, Chuan Wu, Weishan Huang, Yong Zhang, Yonghui Zhang and Wanli Liu

Volume 19, issue 3, 2021

Response to Hulman and colleagues regarding “Glucotypes reveal new patterns of glucose dysregulation” pp. 1-4

Alessandra Breschi, Dalia Perelman and Michael Paul Snyder

Visible name changes promote inequity for transgender researchers pp. 1-4

Leo Chan Gaskins and Craig R McClain

From Reductionism to Reintegration: Solving society’s most pressing problems requires building bridges between data types across the life sciences pp. 1-12

Anne E Thessen, Paul Bogdan, David J Patterson, Theresa M Casey, César Hinojo-Hinojo, Orlando de Lange and Melissa A Haendel

Assessment of transparency indicators across the biomedical literature: How open is open? pp. 1-26

Stylianos Serghiou, Despina G Contopoulos-Ioannidis, Kevin W Boyack, Nico Riedel, Joshua D Wallach and John P A Ioannidis

Reexposure to a sensorimotor perturbation produces opposite effects on explicit and implicit learning processes pp. 1-26

Guy Avraham, J Ryan Morehead, Hyosub E Kim and Richard B Ivry

Rebuild the Academy: Supporting academic mothers during COVID-19 and beyond pp. 1-11

Robinson W Fulweiler, Sarah W Davies, Jennifer F Biddle, Amy J Burgin, Emily H G Cooperdock, Torrance C Hanley, Carly D Kenkel, Amy M Marcarelli, Catherine M Matassa, Talea L Mayo, Lory Z Santiago-Vàzquez, Nikki Traylor-Knowles and Maren Ziegler

How PLOS Biology aims to foster diversity, equity and inclusion in science pp. 1-3

The PLOS Biology Staff Editors

Is “bioinformatics” dead? pp. 1-3

Philip E Bourne

Towards precision medicine in diabetes? A critical review of glucotypes pp. 1-5

Adam Hulman, Yuri D Foreman, Martijn C G J Brouwers, Abraham A Kroon, Koen D Reesink, Pieter C Dagnelie, Carla J H van der Kallen, Marleen M J van Greevenbroek, Kristine Færch, Dorte Vistisen, Marit E Jørgensen, Coen D A Stehouwer and Daniel R Witte

Volume 19, issue 2, 2021

Sustained neural rhythms reveal endogenous oscillations supporting speech perception pp. 1-33

Sander van Bree, Ediz Sohoglu, Matthew H Davis and Benedikt Zoefel

Training early career researchers to use meta-research to improve science: A participant-guided “learn by doing” approach pp. 1-5

Tracey L Weissgerber

Volume 19, issue 1, 2021

Ectoderm to mesoderm transition by down-regulation of actomyosin contractility pp. 1-33

Leily Kashkooli, David Rozema, Lina Espejo-Ramirez, Paul Lasko and François Fagotto