Inferring neural circuit structure from datasets of heterogeneous tuning curves

Takafumi Arakaki, G Barello and Yashar Ahmadian

PLOS Computational Biology, 2019, vol. 15, issue 4, 1-38

Abstract: Tuning curves characterizing the response selectivities of biological neurons can exhibit large degrees of irregularity and diversity across neurons. Theoretical network models that feature heterogeneous cell populations or partially random connectivity also give rise to diverse tuning curves. Empirical tuning curve distributions can thus be utilized to make model-based inferences about the statistics of single-cell parameters and network connectivity. However, a general framework for such an inference or fitting procedure is lacking. We address this problem by proposing to view mechanistic network models as implicit generative models whose parameters can be optimized to fit the distribution of experimentally measured tuning curves. A major obstacle for fitting such models is that their likelihood function is not explicitly available or is highly intractable. Recent advances in machine learning provide ways for fitting implicit generative models without the need to evaluate the likelihood and its gradient. Generative Adversarial Networks (GANs) provide one such framework which has been successful in traditional machine learning tasks. We apply this approach in two separate experiments, showing how GANs can be used to fit commonly used mechanistic circuit models in theoretical neuroscience to datasets of tuning curves. This fitting procedure avoids the computationally expensive step of inferring latent variables, such as the biophysical parameters of, or synaptic connections between, particular recorded cells. Instead, it directly learns generalizable model parameters characterizing the network’s statistical structure such as the statistics of strength and spatial range of connections between different cell types. Another strength of this approach is that it fits the joint high-dimensional distribution of tuning curves, instead of matching a few summary statistics picked a priori by the user, resulting in a more accurate inference of circuit properties. More generally, this framework opens the door to direct model-based inference of circuit structure from data beyond single-cell tuning curves, such as simultaneous population recordings.Author summary: Neurons in the brain respond selectively to some stimuli or for some motor outputs, but not others. Even within a local brain network, neurons exhibit great diversity in their selectivity patterns. Recently, theorists have highlighted the computational importance of diverse neural selectivity. While many mechanistic circuit models are highly stylized and do not capture such diversity, models that feature biologically realistic heterogeneity in their structure do generate responses with diverse selectivities. However, traditionally only the average pattern of selectivity is matched between model and experimental data, and the distribution around the mean is ignored. Here, we provide a hitherto lacking methodology that exploits the full empirical and model distributions of response selectivites, in order to infer various structural circuit properties, such as the statistics of strength and spatial range of connections between different cell types. By applying this method to fit two circuit models from theoretical neuroscience to experimental or simulated data, we show that the proposed method can accurately and robustly infer circuit structure, and optimize a model to match the full range of observed response selectivities. Beyond neuroscience applications, the proposed framework can potentially serve to infer the structure of other biological networks from empirical functional data.

Date: 2019
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pcbi00:1006816

DOI: 10.1371/journal.pcbi.1006816

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