Performance of early warning signals for disease re-emergence: A case study on COVID-19 data

Daniele Proverbio, Françoise Kemp, Stefano Magni and Jorge Gonçalves

PLOS Computational Biology, 2022, vol. 18, issue 3, 1-22

Abstract: Developing measures for rapid and early detection of disease re-emergence is important to perform science-based risk assessment of epidemic threats. In the past few years, several early warning signals (EWS) from complex systems theory have been introduced to detect impending critical transitions and extend the set of indicators. However, it is still debated whether they are generically applicable or potentially sensitive to some dynamical characteristics such as system noise and rates of approach to critical parameter values. Moreover, testing on empirical data has, so far, been limited. Hence, verifying EWS performance remains a challenge. In this study, we tackle this question by analyzing the performance of common EWS, such as increasing variance and autocorrelation, in detecting the emergence of COVID-19 outbreaks in various countries. Our work illustrates that these EWS might be successful in detecting disease emergence when some basic assumptions are satisfied: a slow forcing through the transitions and not-fat-tailed noise. In uncertain cases, we observe that noise properties or commensurable time scales may obscure the expected early warning signals. Overall, our results suggest that EWS can be useful for active monitoring of epidemic dynamics, but that their performance is sensitive to certain features of the underlying dynamics. Our findings thus pave a connection between theoretical and empirical studies, constituting a further step towards the application of EWS indicators for informing public health policies.Author summary: To extend the toolkit of alerting indicators against the emergence of infectious diseases, recent studies have suggested the use of generic early warning signals (EWS) from the theory of dynamical systems. Although extensively investigated theoretically, their empirical performance has still not been fully assessed. We contribute to it by considering the emergence of subsequent waves of COVID-19 in several countries. We show that, when some basic assumptions are met, EWS could be useful against new outbreaks, but they may fail to detect rapid or noisy shifts in epidemic dynamics. Hence, we discuss the potential and limitations of such indicators, depending on country-specific dynamical characteristics and on data collection strategies.

Date: 2022
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pcbi00:1009958

DOI: 10.1371/journal.pcbi.1009958

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