 Geometric separability of mesoscale patterns in embedding representation and visualization of multidimensional data and complex networksAldo Acevedo, Yue Wu, Fabio Lorenzo Traversa and Carlo Vittorio Cannistraci PLOS Complex Systems, 2024, vol. 1, issue 2, 1-28 Abstract: Complexity science studies physical phenomena that cannot be explained by the mere analysis of the single units of a system but requires to account for their interactions. A feature of complexity in connected systems is the emergence of mesoscale patterns in a geometric space, such as groupings in bird flocks. These patterns are formed by groups of points that tend to separate from each other, creating mesoscale structures. When multidimensional data or complex networks are embedded in a geometric space, some mesoscale patterns can appear respectively as clusters or communities, and their geometric separability is a feature according to which the performance of an algorithm for network embedding can be evaluated. Here, we introduce a framework for the definition and measure of the geometric separability (linear and nonlinear) of mesoscale patterns by solving the travelling salesman problem (TSP), and we offer experimental evidence on embedding and visualization of multidimensional data or complex networks, which are generated artificially or are derived from real complex systems. For the first time in literature the TSP’s solution is used to define a criterion of nonlinear separability of points in a geometric space, hence redefining the separability problem in terms of the travelling salesman problem is an innovation which impacts both computer science and complexity theory.Author summary: In daily life, one may observe that birds usually move together in a coordinated fashion as flocks. However, from time to time, birds’ groupings tend to appear inside the flock forming distinct mesoscale structures, which suddenly changes direction and dynamics of the flock, optimizing movements in terms of external factors such as updrafts or predators. The formation of these mesoscale patterns is fundamental for the benefit of the flock, but the individual bird is unawarely supporting the groupings formation, which emerges as a collective behavior from the birds’ interaction. Formation of mesoscale patterns is ubiquitous in nature, from social to molecular scale, revealing important structural and functional properties of complex systems. Thus, techniques that analyze mesoscale patterns in data and networks are important to gain insights into the underlying system’s functions. One important analysis is to map data or network information as points onto a two-dimensional plane where we can visually examine mesoscale patterns and whether their groups keep as separable as possible. Several indices can evaluate group separability, but information about intra-group diversity is neglected. In this research, a new methodology of analysis is proposed to measure group separability for mesoscale patterns while considering intra-group diversity. We propose an adaptive method for evaluation of both linearly and nonlinearly separable patterns that can evaluate how good is the representation of mapping algorithms for mesoscale patterns visualization. We found that assessing nonlinear separability benefits from solutions to the famous travelling salesman problem. Date: 2024 Downloads: (external link) Related works: Export reference: BibTeX RIS (EndNote, ProCite, RefMan) HTML/Text Persistent link: https://EconPapers.repec.org/RePEc:plo:pcsy00:0000012 DOI: 10.1371/journal.pcsy.0000012 Access Statistics for this article More articles in PLOS Complex Systems from Public Library of Science |
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