Investigation of DNA denaturation in Peyrard-Bishop-Dauxois model by molecular dynamics method

Ilya Viatcheslavovitch Likhachev () and Victor Dmitrievitch Lakhno
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Ilya Viatcheslavovitch Likhachev: IMPB RAS, 1, Professor Vitkevich St.
Victor Dmitrievitch Lakhno: IMPB RAS, 1, Professor Vitkevich St.

The European Physical Journal B: Condensed Matter and Complex Systems, 2019, vol. 92, issue 11, 1-5

Abstract: Abstract The phase transition of (PolyA/PolyT)100 duplex into the denaturated state is studied in the Peyrard-Bishop-Dauxois model by the method of direct molecular-dynamical modeling. The temperature dependencies of the total energy and heat capacity of the duplex are calculated. The convergence of the dependence of heat capacity on the number of realizations is shown. The approach applied can be used to calculate the statistical properties of the duplexes of any length and nucleotide composition. Graphical abstract

Keywords: Statistical; and; Nonlinear; Physics (search for similar items in EconPapers)
Date: 2019
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DOI: 10.1140/epjb/e2019-90741-6

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