The Incremental Group Testing Model for Gap Closing in Sequencing Long Molecules

Frank K. Hwang () and Wen-Dar Lin ()
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Frank K. Hwang: National Chiao Tung University
Wen-Dar Lin: Institute of Information Science, Academia Sinica, 128

Journal of Combinatorial Optimization, 2003, vol. 7, issue 4, No 1, 327-337

Abstract: Abstract In this paper, we propose the incremental group testing model for the gap closing problem, which assumes that we can tell the difference between the outcome of testing a subset S, and the outcome of testing S ∪ {x}. We also give improvements over currently best results in literature for some other models.

Keywords: contig sequencing; gap closing; group testing; multiplex PCR; detecting matrix; separating matrix; affine plane method (search for similar items in EconPapers)
Date: 2003
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DOI: 10.1023/B:JOCO.0000017381.11696.c6

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