UPDATING BINDING MOAD — DATA MANAGEMENT AND INFORMATION WORKFLOW

Mark L. Benson, Richard D. Smith, Nickolay A. Khazanov, Heather A. Carlson (), Brandon Dimcheff and Peter Dresslar ()
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Mark L. Benson: Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA
Richard D. Smith: Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA
Nickolay A. Khazanov: Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA
Heather A. Carlson: Departments of Medicinal Chemistry, Bioinformatics, and Biophysics, University of Michigan, Ann Arbor, 428 Church St. Ann Arbor MI 48109-1065, USA
Brandon Dimcheff: Torrey Path, LLC 255 East Liberty Street, Suite 273 Ann Arbor, MI 48104, USA
Peter Dresslar: Torrey Path, LLC 255 East Liberty Street, Suite 273 Ann Arbor, MI 48104, USA

New Mathematics and Natural Computation (NMNC), 2010, vol. 06, issue 01, 49-56

Abstract: Binding MOAD (Mother of All Databases) is the largest collection of high-quality, protein-ligand complexes available from the Protein Data Bank. It has grown to 9837 hand-curated entries. Here, we describe our semi-annual updating procedures and BUDA (Binding Unstructured Data Analysis), a custom workflow tool that incorporates natural language processing technologies to facilitate the annotation process.

Keywords: Protein-ligand binding; database; natural language processing (search for similar items in EconPapers)
Date: 2010
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DOI: 10.1142/S1793005710001608

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