Mathematical Programming Formulations for Problems in Genomics and Proteomics

Cláudio N. Meneses (), Carlos A. S. Oliveira () and Panos M. Pardalos ()
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Cláudio N. Meneses: University of Florida
Carlos A. S. Oliveira: Oklahoma State University
Panos M. Pardalos: University of Florida

A chapter in Data Mining in Biomedicine, 2007, pp 275-290 from Springer

Abstract: Abstract Computational biology problems generally involve the determination of discrete structures over biological configurations determined by genomic or proteomic data. Such problems present great opportunities for application of mathematical programming techniques. We give an overview of formulations employed for the solution of problems in genomics and proteomics. In particular, we discuss mathematical programming formulations for string comparison and selection problems, with high applicability in biological data processing.

Keywords: Integer programming; mathematical programming; computational biology (search for similar items in EconPapers)
Date: 2007
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Persistent link: https://EconPapers.repec.org/RePEc:spr:spochp:978-0-387-69319-4_16

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DOI: 10.1007/978-0-387-69319-4_16

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