U.C. Berkeley Division of Biostatistics Working Paper Series

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1161: Multiple Testing and Data Adaptive Regression: An Application to HIV-1 Sequence Data

Merrill Birkner, Sandra Sinisi and Mark van der Laan

1160: GLLAMM Manual

Sophia Rabe-Hesketh, Anders Skrondal and Andrew Pickles

1159: Data Adaptive Estimation of the Treatment Specific Mean

Yue Wang and Mark van der Laan

1158: History-Adjusted Marginal Structural Models and Statically-Optimal Dynamic Treatment Regimes

Mark van der Laan and Maya Petersen

1157: Estimation of Treatment Effects in Randomized Trials with Noncompliance and a Dichotomous Outcome

Mark van der Laan, Alan Hubbard and Nicholas Jewell

1156: Estimating a Survival Distribution with Current Status Data and High-Dimensional Covariates

Mark van der Laan and Aad van der Vaart

1155: Estimation of Direct and Indirect Causal Effects in Longitudinal Studies

Mark van der Laan and Maya Petersen

1154: Linear Life Expectancy Regression with Censored Data

Ying Chen and Su-Chun Cheng

1153: A Note on Empirical Likelihood Inference of Residual Life Regression

Ying Chen and Yichuan Zhao

1152: Semiparametric Quantitative-Trait-Locus Mapping: II. on Censored Age-at-Onset

Ying Chen, Chengcheng Hu and Rongling Wu

1151: Semiparametric Quantitative-Trait-Locus Mapping: I. on Functional Growth Curves

Ying Chen and Rongling Wu

1150: Quantification and Visualization of LD Patterns and Identification of Haplotype Blocks

Yan Wang and Sandrine Dudoit

1149: Survival Point Estimate Prediction in Cohorts with Nested Case-Control Study Designs

Annette Molinaro, Mark van der Laan, Dan Moore and Karla Kerlikowske

1148: Mean Response Models of Repeated Measurements in Presence of Varying Effectiveness Onset

Ying Chen and Su-Chun Cheng

1147: Multiple Testing Methods For ChIP-Chip High Density Oligonucleotide Array Data

Sunduz Keles, Mark van der Laan, Sandrine Dudoit and Simon Cawley

1146: Semiparametric Regression Analysis of Mean Residual Life with Censored Survival Data

Ying Chen and Su-Chun Cheng

1145: Regulatory Motif Finding by Logic Regression

Sunduz Keles, Mark van der Laan and Chris Vulpe

1144: A Statistical Method for Constructing Transcriptional Regulatory Networks Using Gene Expression and Sequence Data

Biao Xing and Mark van der Laan

1142: Loss-Based Cross-Validated Deletion/Substitution/Addition Algorithms in Estimation

Sandra Sinisi and Mark van der Laan

1141: The Cross-Validated Adaptive Epsilon-Net Estimator

Mark van der Laan, Sandrine Dudoit and Aad van der Vaart

1140: Multiple Testing. Part III. Procedures for Control of the Generalized Family-Wise Error Rate and Proportion of False Positives

Mark van der Laan, Sandrine Dudoit and Katherine Pollard

1139: Comparison of the Inverse Probability of Treatment Weighted (IPTW) Estimator With a Naïve Estimator in the Analysis of Longitudinal Data With Time-Dependent Confounding: A Simulation Study

Thaddeus Haight, Romain Neugebauer, Ira Tager and Mark van der Laan

1138: Multiple Testing. Part II. Step-Down Procedures for Control of the Family-Wise Error Rate

Mark van der Laan, Sandrine Dudoit and Katherine Pollard

1137: Multiple Testing. Part I. Single-Step Procedures for Control of General Type I Error Rates

Sandrine Dudoit, Mark van der Laan and Katherine Pollard

1136: Loss-Based Estimation with Cross-Validation: Applications to Microarray Data Analysis and Motif Finding

Sandrine Dudoit, Mark van der Laan, Sunduz Keles, Annette Molinaro, Sandra Sinisi and Siew Leng Teng