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SQ: Stata module for sequence analysis

Ulrich Kohler (), Magdalena Luniak and Christian Brzinsky-Fay

Statistical Software Components from Boston College Department of Economics

Abstract: The term sq refers to sequence data and to the commands for analyzing these data. Sequences are entities build by a limited number of elements that are ordered in a specific way. A typical example is the human DNA, where the "Elements" Adenin, Cytosin, Guanin and Thymin (the "organic Bases") are ordered into a sequence. Other sequences are songs, that are build by tones that appear in a specific order, or careers of employers that are build by specific job-positions and ordered along time. Sequence data are data that contains one variable holding the elements, one variable that contain the position of each elements within this sequence, and one variable that identifies the sequences itself. Hence, sequence data requires data that are set up in what Stata usually calls the "long form". This version is updated from that published in Stata Journal, 2006, 6:4.

Language: Stata
Requires: Stata version 10
Keywords: sequence data; DNA; tabulation; graphics; matching; cluster analysis (search for similar items in EconPapers)
Date: 2006-08-08, Revised 2016-11-17
Note: This module should be installed from within Stata by typing "ssc install sq". Windows users should not attempt to download these files with a web browser.
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Downloads: (external link)
http://fmwww.bc.edu/repec/bocode/s/sq.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqallpos.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqelemcount.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqepicount.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqfirstpos.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqfreq.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqgapcount.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqgaplength.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqitemcount.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqlength.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqmarkpattern.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqranks.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqtostring.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/_/_gsqstrnn.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/l/lsq.mata program code (text/plain)
http://fmwww.bc.edu/repec/bocode/l/lsq.mlib object library (application/x-stata)
http://fmwww.bc.edu/repec/bocode/l/lsqbm.mata program code (text/plain)
http://fmwww.bc.edu/repec/bocode/l/lsqbm.mlib object library (application/x-stata)
http://fmwww.bc.edu/repec/bocode/s/sqclusterdat.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqclusterdat.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqclustermat.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqclustermat.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqdemo.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqdes.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqdes.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqdt.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqegen.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqindexplot.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqindexplot.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqom.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqom.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqparcoord.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqparcoord.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqset.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqset.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstat.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstatlist.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstatlist.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstatsum.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstatsum.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstattab.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstattab1.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstattab1.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstattab2.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstattab2.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstattabsum.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstattabsum.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqtab.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqtab.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqomplug.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqmdsadd.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqmdsadd.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqmodalplot.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqmodalplot.sthlp help file (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqpercentageplot.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstrlev.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/s/sqstrmerge.ado program code (text/plain)
http://fmwww.bc.edu/repec/bocode/y/youthemp.dta sample data (application/x-stata)

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