An experimental framework to assess biomolecular condensates in bacteria

Y Hoang, Christopher A. Azaldegui, Rachel E. Dow, Maria Ghalmi, Julie S. Biteen () and Anthony G. Vecchiarelli ()
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Y Hoang: University of Michigan
Christopher A. Azaldegui: University of Michigan
Rachel E. Dow: University of Michigan
Maria Ghalmi: University of Michigan
Julie S. Biteen: University of Michigan
Anthony G. Vecchiarelli: University of Michigan

Nature Communications, 2024, vol. 15, issue 1, 1-16

Abstract: Abstract High-resolution imaging of biomolecular condensates in living cells is essential for correlating their properties to those observed through in vitro assays. However, such experiments are limited in bacteria due to resolution limitations. Here we present an experimental framework that probes the formation, reversibility, and dynamics of condensate-forming proteins in Escherichia coli as a means to determine the nature of biomolecular condensates in bacteria. We demonstrate that condensates form after passing a threshold concentration, maintain a soluble fraction, dissolve upon shifts in temperature and concentration, and exhibit dynamics consistent with internal rearrangement and exchange between condensed and soluble fractions. We also discover that an established marker for insoluble protein aggregates, IbpA, has different colocalization patterns with bacterial condensates and aggregates, demonstrating its potential applicability as a reporter to differentiate the two in vivo. Overall, this framework provides a generalizable, accessible, and rigorous set of experiments to probe the nature of biomolecular condensates on the sub-micron scale in bacterial cells.

Date: 2024
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DOI: 10.1038/s41467-024-47330-4

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