Nowcasting the 2022 mpox outbreak in England

Christopher E Overton, Sam Abbott, Rachel Christie, Fergus Cumming, Julie Day, Owen Jones, Rob Paton, Charlie Turner and Thomas Ward

PLOS Computational Biology, 2023, vol. 19, issue 9, 1-23

Abstract: In May 2022, a cluster of mpox cases were detected in the UK that could not be traced to recent travel history from an endemic region. Over the coming months, the outbreak grew, with over 3000 total cases reported in the UK, and similar outbreaks occurring worldwide. These outbreaks appeared linked to sexual contact networks between gay, bisexual and other men who have sex with men. Following the COVID-19 pandemic, local health systems were strained, and therefore effective surveillance for mpox was essential for managing public health policy. However, the mpox outbreak in the UK was characterised by substantial delays in the reporting of the symptom onset date and specimen collection date for confirmed positive cases. These delays led to substantial backfilling in the epidemic curve, making it challenging to interpret the epidemic trajectory in real-time. Many nowcasting models exist to tackle this challenge in epidemiological data, but these lacked sufficient flexibility. We have developed a nowcasting model using generalised additive models that makes novel use of individual-level patient data to correct the mpox epidemic curve in England. The aim of this model is to correct for backfilling in the epidemic curve and provide real-time characteristics of the state of the epidemic, including the real-time growth rate. This model benefited from close collaboration with individuals involved in collecting and processing the data, enabling temporal changes in the reporting structure to be built into the model, which improved the robustness of the nowcasts generated. The resulting model accurately captured the true shape of the epidemic curve in real time.Author summary: During 2022, outbreaks of mpox, the disease caused by the monkeypox virus, occurred simultaneously in multiple non-endemic countries, including England. These outbreaks were distinct from historic outbreaks with a majority of cases in gay, bisexual and other men who have sex with men and in individuals without recent travel histories to endemic countries. To inform public health policy, understanding the number of new cases and growth rate of the outbreak in real-time is essential. However, the outbreak was characterised by long delays from individuals developing symptoms (or getting a test) and being reported as a positive case. This creates a biased picture of the outbreak, where observed real-time cases underestimates the true extent of the outbreak. We developed a mathematical model that accounts for these reporting delays to estimate the true shape of the epidemic curve in real-time. The modelled outputs are able to accurately capture the true shape of the epidemic, and provide improved real-time insight over the raw data. This model was used continuously throughout the outbreak response in the UK to provide insight to the incident management team at the UK Health Security Agency.

Date: 2023
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pcbi00:1011463

DOI: 10.1371/journal.pcbi.1011463

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