Challenges in Real-Time Prediction of Infectious Disease: A Case Study of Dengue in Thailand

Nicholas G Reich, Stephen A Lauer, Krzysztof Sakrejda, Sopon Iamsirithaworn, Soawapak Hinjoy, Paphanij Suangtho, Suthanun Suthachana, Hannah E Clapham, Henrik Salje, Derek A T Cummings and Justin Lessler

PLOS Neglected Tropical Diseases, 2016, vol. 10, issue 6, 1-17

Abstract: Epidemics of communicable diseases place a huge burden on public health infrastructures across the world. Producing accurate and actionable forecasts of infectious disease incidence at short and long time scales will improve public health response to outbreaks. However, scientists and public health officials face many obstacles in trying to create such real-time forecasts of infectious disease incidence. Dengue is a mosquito-borne virus that annually infects over 400 million people worldwide. We developed a real-time forecasting model for dengue hemorrhagic fever in the 77 provinces of Thailand. We created a practical computational infrastructure that generated multi-step predictions of dengue incidence in Thai provinces every two weeks throughout 2014. These predictions show mixed performance across provinces, out-performing seasonal baseline models in over half of provinces at a 1.5 month horizon. Additionally, to assess the degree to which delays in case reporting make long-range prediction a challenging task, we compared the performance of our real-time predictions with predictions made with fully reported data. This paper provides valuable lessons for the implementation of real-time predictions in the context of public health decision making.Author Summary: Predicting the course of infectious disease outbreaks in real-time is a challenging task. It requires knowledge of the particular disease system as well as a pipeline that can turn raw data from a public health surveillance system into calibrated predictions of disease incidence. Dengue is a mosquito-borne infectious disease that places an immense public health and economic burden upon countries around the world, especially in tropical areas. In 2014 our research team, a collaboration of the Ministry of Public Health of Thailand and academic researchers from the United States, implemented a system for generating real-time forecasts of dengue hemorrhagic fever based on the disease surveillance reports from Thailand. We compared predictions from several different statistical models, identifying locations and times where our predictions were accurate. We also quantified the extent to which delayed reporting of cases in real-time impacted our predictions. Broadly speaking, improving real-time predictions can enable more targeted, timely interventions and risk communication, both of which have a measurable impact on disease spread in epidemic and pandemic scenarios. It is vital that we continue to build knowledge about the best ways to make these forecasts and integrate them into public health decision making.

Date: 2016
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pntd00:0004761

DOI: 10.1371/journal.pntd.0004761

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