miRWalk: An online resource for prediction of microRNA binding sites

Carsten Sticht, Carolina De La Torre, Alisha Parveen and Norbert Gretz

PLOS ONE, 2018, vol. 13, issue 10, 1-6

Abstract: miRWalk is an open-source platform providing an intuitive interface that generates predicted and validated miRNA-binding sites of known genes of human, mouse, rat, dog and cow. The core of miRWalk is the miRNA target site prediction with the random-forest-based approach software TarPmiR searching the complete transcript sequence including the 5’-UTR, CDS and 3’-UTR. Moreover, it integrates results other databases with predicted and validated miRNA-target interactions. The focus is set on a modular design and extensibility as well as a fast update cycle. The database is available using Python, MySQL and HTML/Javascript Database URL: http://mirwalk.umm.uni-heidelberg.de.

Date: 2018
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pone00:0206239

DOI: 10.1371/journal.pone.0206239

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