Drug sensitivity prediction with high-dimensional mixture regression

Qianyun Li, Runmin Shi and Faming Liang

PLOS ONE, 2019, vol. 14, issue 2, 1-18

Abstract: This paper proposes a mixture regression model-based method for drug sensitivity prediction. The proposed method explicitly addresses two fundamental issues in drug sensitivity prediction, namely, population heterogeneity and feature selection pertaining to each of the subpopulations. The mixture regression model is estimated using the imputation-conditional consistency algorithm, and the resulting estimator is consistent. This paper also proposes an average-BIC criterion for determining the number of components for the mixture regression model. The proposed method is applied to the CCLE dataset, and the numerical results indicate that the proposed method can make a drastic improvement over the existing ones, such as random forest, support vector regression, and regularized linear regression, in both drug sensitivity prediction and feature selection. The p-values for the comparisons in drug sensitivity prediction can reach the order O(10−8) or lower for the drugs with heterogeneous populations.

Date: 2019
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pone00:0212108

DOI: 10.1371/journal.pone.0212108

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