Supervised spike sorting feasibility of noisy single-electrode extracellular recordings: Systematic study of human C-nociceptors recorded via microneurography

Alina Troglio, Peter Konradi, Andrea Fiebig, Ariadna Pérez Garriga, Rainer Röhrig, James Dunham, Ekaterina Kutafina and Barbara Namer

PLOS ONE, 2025, vol. 20, issue 9, 1-28

Abstract: Sorting spikes from noisy single-channel in-vivo extracellular recordings is challenging, particularly due to the lack of ground truth data. Microneurography, an electrophysiological technique for studying peripheral sensory systems, employs experimental protocols that time-lock a subset of spikes. Stable propagation speed of nerve signals enables reliable sorting of these spikes. Leveraging this property, we established ground truth labels for data collected in two European laboratories and designed a proof-of-concept open-source pipeline to process data across diverse hardware and software systems. Using the labels derived from the time-locked spikes, we employed a supervised approach instead of the unsupervised methods typically used in spike sorting. We evaluated multiple low-dimensional representations of spikes and found that raw signal features outperformed more complex approaches, which are effective in brain recordings. However, the choice of the optimal features remained dataset-specific, influenced by the similarity of average spike shapes and the number of fibers contributing to the signal. Based on our findings, we recommend tailoring lightweight algorithms to individual recordings and assessing the “sortability feasibility” based on achieved accuracy and the research question before proceeding with sorting of non-time-locked spikes in future projects.

Date: 2025
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Persistent link: https://EconPapers.repec.org/RePEc:plo:pone00:0329537

DOI: 10.1371/journal.pone.0329537

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