A Template-Based Mixed-Integer Linear Programming Sequence Alignment Model

Scott R. McAllister, Rohit Rajgaria and Christodoulos A. Floudas ()
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Scott R. McAllister: Princeton University
Rohit Rajgaria: Princeton University
Christodoulos A. Floudas: Princeton University

A chapter in Models and Algorithms for Global Optimization, 2007, pp 343-360 from Springer

Abstract: Abstract The similarity of DNA or protein sequences between species is an approximate measure of the evolutionary distance between them. By identifying and aligning pairs of sequences, knowledge of the genetic importance of a gene or protein of one species can be extended to a second, relatively unknown species with a similar sequence.

Keywords: Optimal Alignment; Alignment Problem; Bovine Pancreatic Trypsin Inhibitor; Bovine Rhodopsin; Pairwise Sequence Alignment (search for similar items in EconPapers)
Date: 2007
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DOI: 10.1007/978-0-387-36721-7_21

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