Bioinformatics Analysis of Q0D1P0 Gene of Mangrove Endophytic Fungus Aspergillus terreus

Hongbing Qi and Ziyang Chen

Asian Agricultural Research, 2023, vol. 15, issue 10

Abstract: [Objectives] To analyze the gene structure of the protein that predicts 6-hydroxymellein synthase of Aspergillus terreus and predict the characteristics and functions of the protein structure encoded by the gene. [Methods] Various information analysis tools in NCBI, CBS and ExPASy websites were adopted. [Results] The Q0D1P0 gene had a full length of 2 954 bp, with 952 amino acids in the coding area, and Q0D1P0 had the highest homology with the hypothetical protein ATETN484_0003008800. The molecular weight of Q0D1P0 protein was 105 040.56, the theoretical isoelectric point (pI) was 5.69 and the grand average of hydropathieity was -0.242. It was speculated that Q0D1P0 was an unstable and non-secretory hydrophilic protein located in cytoplasm without transmembrane domain or signal peptide. It could be predicted that the secondary structure of Q0D1P0 encoding protein consisted mainly of random coil, α-helix and a PKS-DH anhydrase domain. [Conclusions] The results will lay a theoretical foundation for cloning and expression of 6-hydroxymellein synthase and further understanding of its activity and function.

Keywords: Agribusiness (search for similar items in EconPapers)
Date: 2023
References: Add references at CitEc
Citations:

Downloads: (external link)
https://ageconsearch.umn.edu/record/342011/files/B ... gillus%20terreus.PDF (application/pdf)

Related works:
This item may be available elsewhere in EconPapers: Search for items with the same title.

Export reference: BibTeX RIS (EndNote, ProCite, RefMan) HTML/Text

Persistent link: https://EconPapers.repec.org/RePEc:ags:asagre:342011

DOI: 10.22004/ag.econ.342011

Access Statistics for this article

More articles in Asian Agricultural Research from USA-China Science and Culture Media Corporation
Bibliographic data for series maintained by AgEcon Search ().