Theoretical estimation of metabolic network robustness against multiple reaction knockouts using branching process approximation

Kazuhiro Takemoto, Takeyuki Tamura and Tatsuya Akutsu

Physica A: Statistical Mechanics and its Applications, 2013, vol. 392, issue 21, 5525-5535

Abstract: In our previous study, we showed that the branching process approximation is useful for estimating metabolic robustness, measured using the impact degree. By applying a theory of random family forests, we here extend the branching process approximation to consider the knockout of multiple reactions, inspired by the importance of multiple knockouts reported by recent computational and experimental studies. In addition, we propose a better definition of the number of offspring of each reaction node, allowing for an improved estimation of the impact degree distribution obtained as a result of a single knockout. Importantly, our proposed approach is also applicable to multiple knockouts. The comparisons between theoretical predictions and numerical results using real-world metabolic networks demonstrate the validity of the modeling based on random family forests for estimating the impact degree distributions resulting from the knockout of multiple reactions.

Keywords: Metabolic network; Branching process; Cascading failure (search for similar items in EconPapers)
Date: 2013
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Persistent link: https://EconPapers.repec.org/RePEc:eee:phsmap:v:392:y:2013:i:21:p:5525-5535

DOI: 10.1016/j.physa.2013.07.003

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