Protein contact maps: A binary depiction of protein 3D structures

Isaac Arnold Emerson and Arumugam Amala

Physica A: Statistical Mechanics and its Applications, 2017, vol. 465, issue C, 782-791

Abstract: In recent years, there has been a considerable interest in examining the structure and dynamics of complex networks. Proteins in 3D space may also be considered as complex systems emerged through the interactions of their constituent amino acids. This representation provides a powerful framework to uncover the general organized principle of protein contact network. Here we reviewed protein contact map in terms of protein structure prediction and analyses. In addition, we had also discussed the various computational techniques for the prediction of protein contact maps and the tools to visualize contact maps.

Keywords: Protein structure prediction; Contact map; Complex network (search for similar items in EconPapers)
Date: 2017
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Persistent link: https://EconPapers.repec.org/RePEc:eee:phsmap:v:465:y:2017:i:c:p:782-791

DOI: 10.1016/j.physa.2016.08.033

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