Genetic Diversity of Black Amaranth ( Amaranthus quitensis Kunth) Landraces of Ecuadorian Highlands: Association Genotypes—Color Morphotypes

Hipatia Delgado and Juan Pedro Martín ()
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Hipatia Delgado: Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Avda. Puerta de Hierro 2-4, 28040 Madrid, Spain
Juan Pedro Martín: Departamento de Biotecnología-Biología Vegetal, Escuela Técnica Superior de Ingeniería Agronómica, Alimentaria y de Biosistemas, Universidad Politécnica de Madrid, Avda. Puerta de Hierro 2-4, 28040 Madrid, Spain

Agriculture, 2022, vol. 13, issue 1, 1-19

Abstract: Black amaranth ( Amarantus quitensis Kunth) is an ancestral crop of the Ecuadorian Andean region, where traditionally it is called ataco or sangorache. Nowadays, there is some information about the phenotypic diversity of black amaranth landraces, but there are no data about their genetic diversity. In this study, we evaluated the genetic diversity of 139 black amaranth accessions collected twice (1981–1986 and 2014–2015) in three representative Ecuadorian Andean provinces for this crop (Imbabura, Tungurahua, and Cañar) using nine simple sequence repeats (SSR) markers. We detected low genetic diversity levels; only a total of 36 alleles were amplified in 139 accessions, with a mean allelic richness of 4.0 per marker, observed heterozygosity of 0.014, expected heterozygosity of 0.134, and Shannon’s information index of 0.297. In addition, only 17 genotypes were found, with a predominant genotype (83.6%) and up to 12 accession-unique genotypes. Moreover, a certain genetic diversity decrease was observed over the last decades, especially in Tungurahua and Cañar, where today practically only the predominant genotype exists. The ataco germplasm is genetically structured into two well-defined genotype clusters and could constitute two different genetic lineages. Furthermore, a clear association of each genotype group with a different color morphotype defined in a previous agromorphological characterization was observed. The accessions of the majority group of genotypes showed purple pigmentation in stems, leaves, and inflorescences, whereas those of the other genotype group showed less intense pigmentation (pink stems, inflorescences, and green leaves). Molecular information obtained in this study may be useful for the suitable management and conservation of this underutilized genetic plant resource that is of great food and cultural significance for indigenous farming communities of the Ecuadorian highlands.

Keywords: amaranth; ataco; genetic structure; landraces; on-farm conservation; SSR markers; traditional cultivars (search for similar items in EconPapers)
JEL-codes: Q1 Q10 Q11 Q12 Q13 Q14 Q15 Q16 Q17 Q18 (search for similar items in EconPapers)
Date: 2022
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