Structure of the conserved GTPase domain of the signal recognition particle

Douglas M. Freymann, Robert J. Keenan, Robert M. Stroud and Peter Walter
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Douglas M. Freymann: University of California
Robert J. Keenan: University of California
Robert M. Stroud: University of California
Peter Walter: University of California

Nature, 1997, vol. 385, issue 6614, 361-364

Abstract: Abstract The signal-recognition particle (SRP) and its receptor (SR) function in the co-translational targeting of nascent protein–ribosome complexes to the membrane translocation apparatus1. The SRP protein subunit (termed Ffh in bacteria) that recognizes the signal sequence of nascent polypeptides is a GTPase, as is the SR-α subunit (termed FtsY)2,3. Ffh and FtsY interact directly, each stimulating the GTP hydrolysis activity of the other4. The sequence of Ffh suggests three domains: an amino-terminal N domain of unknown function, a central GTPase G domain, and a methionine-rich M domain that binds both SRP RNA and signal peptides5,6. Sequence conservation suggests that structurally similar N and G domains are present in FtsY7,8. Here we report the structure of the nucleotide-free form of the NG fragment of Ffh. Consistent with a role for apo Ffh in protein targeting, the side chains of the empty active-site pocket form a tight network of interactions which may stabilize the nucleotide-free protein. The structural relationship between the two domains suggests that the N domain senses or controls the nucleotide occupancy of the GTPase domain. A structural subdomain unique to these evolutionarily conserved GTPases constitutes them as a distinct subfamily in the GTPase superfamily9.

Date: 1997
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DOI: 10.1038/385361a0

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