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Logical computation using algorithmic self-assembly of DNA triple-crossover molecules

Chengde Mao, Thomas H. LaBean, John H. Reif and Nadrian C. Seeman ()
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Chengde Mao: New York University
Thomas H. LaBean: Duke University
John H. Reif: Duke University
Nadrian C. Seeman: New York University

Nature, 2000, vol. 407, issue 6803, 493-496

Abstract: Abstract Recent work1,2,3 has demonstrated the self-assembly of designed periodic two-dimensional arrays composed of DNA tiles, in which the intermolecular contacts are directed by ‘sticky’ ends. In a mathematical context, aperiodic mosaics may be formed by the self-assembly of ‘Wang’ tiles4, a process that emulates the operation of a Turing machine. Macroscopic self-assembly has been used to perform computations5; there is also a logical equivalence between DNA sticky ends and Wang tile edges6,7. This suggests that the self-assembly of DNA-based tiles could be used to perform DNA-based computation8. Algorithmic aperiodic self-assembly requires greater fidelity than periodic self-assembly, because correct tiles must compete with partially correct tiles. Here we report a one-dimensional algorithmic self-assembly of DNA triple-crossover molecules9 that can be used to execute four steps of a logical (cumulative XOR) operation on a string of binary bits.

Date: 2000
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DOI: 10.1038/35035038

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