Sequence and analysis of chromosome 1 of the plant Arabidopsis thaliana

Athanasios Theologis (), Joseph R. Ecker (), Curtis J. Palm, Nancy A. Federspiel, Samir Kaul, Owen White, Jose Alonso, Hootan Altafi, Rina Araujo, Cheryl L. Bowman, Shelise Y. Brooks, Eugen Buehler, April Chan, Qimin Chao, Huaming Chen, Rosa F. Cheuk, Christina W. Chin, Mike K. Chung, Lane Conn, Aaron B. Conway, Andrew R. Conway, Todd H. Creasy, Ken Dewar, Patrick Dunn, Pelin Etgu, Tamara V. Feldblyum, JiDong Feng, Betty Fong, Claire Y. Fujii, John E. Gill, Andrew D. Goldsmith, Brian Haas, Nancy F. Hansen, Beth Hughes, Lucas Huizar, Jonathan L. Hunter, Jennifer Jenkins, Chanda Johnson-Hopson, Shehnaz Khan, Elizabeth Khaykin, Christopher J. Kim, Hean L. Koo, Irina Kremenetskaia, David B. Kurtz, Andrea Kwan, Bao Lam, Stephanie Langin-Hooper, Andrew Lee, Jeong M. Lee, Catherine A. Lenz, Joycelyn. H. Li, YaPing Li, Xiaoying Lin, Shirley X. Liu, Zhaoying A. Liu, Jason S. Luros, Rama Maiti, Andre Marziali, Jennifer Militscher, Molly Miranda, Michelle Nguyen, William C. Nierman, Brian I. Osborne, Grace Pai, Jeremy Peterson, Paul K. Pham, Michael Rizzo, Timothy Rooney, Don Rowley, Hitomi Sakano, Steven L. Salzberg, Jody R. Schwartz, Paul Shinn, Audrey M. Southwick, Hui Sun, Luke J. Tallon, Gabriel Tambunga, Mitsue J. Toriumi, Christopher D. Town, Teresa Utterback, Susan Van Aken, Maria Vaysberg, Valentina S. Vysotskaia, Michelle Walker, Dongying Wu, Guixia Yu, Claire M. Fraser, J. Craig Venter and Ronald W. Davis
Additional contact information
Athanasios Theologis: Plant Gene Expression Center/USDA-U.C. Berkeley
Joseph R. Ecker: Plant Science Institute, University of Pennsylvania
Curtis J. Palm: Stanford Genome Technology Center
Nancy A. Federspiel: Stanford Genome Technology Center
Samir Kaul: The Institute for Genomic Research
Owen White: The Institute for Genomic Research
Jose Alonso: Plant Science Institute, University of Pennsylvania
Hootan Altafi: Stanford Genome Technology Center
Rina Araujo: Stanford Genome Technology Center
Cheryl L. Bowman: The Institute for Genomic Research
Shelise Y. Brooks: Plant Science Institute, University of Pennsylvania
Eugen Buehler: Plant Science Institute, University of Pennsylvania
April Chan: Plant Gene Expression Center/USDA-U.C. Berkeley
Qimin Chao: Plant Science Institute, University of Pennsylvania
Huaming Chen: Plant Science Institute, University of Pennsylvania
Rosa F. Cheuk: Plant Science Institute, University of Pennsylvania
Christina W. Chin: Plant Gene Expression Center/USDA-U.C. Berkeley
Mike K. Chung: Plant Gene Expression Center/USDA-U.C. Berkeley
Lane Conn: Stanford Genome Technology Center
Aaron B. Conway: Stanford Genome Technology Center
Andrew R. Conway: Stanford Genome Technology Center
Todd H. Creasy: The Institute for Genomic Research
Ken Dewar: Plant Science Institute, University of Pennsylvania
Patrick Dunn: Plant Science Institute, University of Pennsylvania
Pelin Etgu: Plant Gene Expression Center/USDA-U.C. Berkeley
Tamara V. Feldblyum: The Institute for Genomic Research
JiDong Feng: Plant Science Institute, University of Pennsylvania
Betty Fong: Plant Gene Expression Center/USDA-U.C. Berkeley
Claire Y. Fujii: The Institute for Genomic Research
John E. Gill: The Institute for Genomic Research
Andrew D. Goldsmith: Plant Gene Expression Center/USDA-U.C. Berkeley
Brian Haas: The Institute for Genomic Research
Nancy F. Hansen: Stanford Genome Technology Center
Beth Hughes: Plant Gene Expression Center/USDA-U.C. Berkeley
Lucas Huizar: Stanford Genome Technology Center
Jonathan L. Hunter: Plant Science Institute, University of Pennsylvania
Jennifer Jenkins: The Institute for Genomic Research
Chanda Johnson-Hopson: Plant Science Institute, University of Pennsylvania
Shehnaz Khan: Plant Science Institute, University of Pennsylvania
Elizabeth Khaykin: Plant Science Institute, University of Pennsylvania
Christopher J. Kim: Plant Science Institute, University of Pennsylvania
Hean L. Koo: The Institute for Genomic Research
Irina Kremenetskaia: Plant Gene Expression Center/USDA-U.C. Berkeley
David B. Kurtz: Stanford Genome Technology Center
Andrea Kwan: Plant Gene Expression Center/USDA-U.C. Berkeley
Bao Lam: Stanford Genome Technology Center
Stephanie Langin-Hooper: Plant Science Institute, University of Pennsylvania
Andrew Lee: Plant Science Institute, University of Pennsylvania
Jeong M. Lee: Plant Gene Expression Center/USDA-U.C. Berkeley
Catherine A. Lenz: Plant Gene Expression Center/USDA-U.C. Berkeley
Joycelyn. H. Li: Plant Gene Expression Center/USDA-U.C. Berkeley
YaPing Li: Plant Science Institute, University of Pennsylvania
Xiaoying Lin: The Institute for Genomic Research
Shirley X. Liu: Plant Gene Expression Center/USDA-U.C. Berkeley
Zhaoying A. Liu: Plant Gene Expression Center/USDA-U.C. Berkeley
Jason S. Luros: Plant Gene Expression Center/USDA-U.C. Berkeley
Rama Maiti: The Institute for Genomic Research
Andre Marziali: Stanford Genome Technology Center
Jennifer Militscher: The Institute for Genomic Research
Molly Miranda: Stanford Genome Technology Center
Michelle Nguyen: Stanford Genome Technology Center
William C. Nierman: The Institute for Genomic Research
Brian I. Osborne: Plant Gene Expression Center/USDA-U.C. Berkeley
Grace Pai: The Institute for Genomic Research
Jeremy Peterson: The Institute for Genomic Research
Paul K. Pham: Plant Gene Expression Center/USDA-U.C. Berkeley
Michael Rizzo: The Institute for Genomic Research
Timothy Rooney: The Institute for Genomic Research
Don Rowley: Stanford Genome Technology Center
Hitomi Sakano: Plant Gene Expression Center/USDA-U.C. Berkeley
Steven L. Salzberg: The Institute for Genomic Research
Jody R. Schwartz: Plant Gene Expression Center/USDA-U.C. Berkeley
Paul Shinn: Plant Science Institute, University of Pennsylvania
Audrey M. Southwick: Stanford Genome Technology Center
Hui Sun: Plant Science Institute, University of Pennsylvania
Luke J. Tallon: The Institute for Genomic Research
Gabriel Tambunga: Plant Science Institute, University of Pennsylvania
Mitsue J. Toriumi: Plant Gene Expression Center/USDA-U.C. Berkeley
Christopher D. Town: The Institute for Genomic Research
Teresa Utterback: The Institute for Genomic Research
Susan Van Aken: The Institute for Genomic Research
Maria Vaysberg: Plant Gene Expression Center/USDA-U.C. Berkeley
Valentina S. Vysotskaia: Plant Gene Expression Center/USDA-U.C. Berkeley
Michelle Walker: Plant Science Institute, University of Pennsylvania
Dongying Wu: The Institute for Genomic Research
Guixia Yu: Plant Gene Expression Center/USDA-U.C. Berkeley
Claire M. Fraser: The Institute for Genomic Research
J. Craig Venter: The Institute for Genomic Research
Ronald W. Davis: Stanford Genome Technology Center

Nature, 2000, vol. 408, issue 6814, 816-820

Abstract: Abstract The genome of the flowering plant Arabidopsis thaliana has five chromosomes1,2. Here we report the sequence of the largest, chromosome 1, in two contigs of around 14.2 and 14.6 megabases. The contigs extend from the telomeres to the centromeric borders, regions rich in transposons, retrotransposons and repetitive elements such as the 180-base-pair repeat. The chromosome represents 25% of the genome and contains about 6,850 open reading frames, 236 transfer RNAs (tRNAs) and 12 small nuclear RNAs. There are two clusters of tRNA genes at different places on the chromosome. One consists of 27 tRNAPro genes and the other contains 27 tandem repeats of tRNATyr-tRNATyr-tRNASergenes. Chromosome 1 contains about 300 gene families with clustered duplications. There are also many repeat elements, representing 8% of the sequence.

Date: 2000
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DOI: 10.1038/35048500

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