Great ape genetic diversity and population history

Javier Prado-Martinez, Peter H. Sudmant, Jeffrey M. Kidd, Heng Li, Joanna L. Kelley, Belen Lorente-Galdos, Krishna R. Veeramah, August E. Woerner, Timothy D. O’Connor, Gabriel Santpere, Alexander Cagan, Christoph Theunert, Ferran Casals, Hafid Laayouni, Kasper Munch, Asger Hobolth, Anders E. Halager, Maika Malig, Jessica Hernandez-Rodriguez, Irene Hernando-Herraez, Kay Prüfer, Marc Pybus, Laurel Johnstone, Michael Lachmann, Can Alkan, Dorina Twigg, Natalia Petit, Carl Baker, Fereydoun Hormozdiari, Marcos Fernandez-Callejo, Marc Dabad, Michael L. Wilson, Laurie Stevison, Cristina Camprubí, Tiago Carvalho, Aurora Ruiz-Herrera, Laura Vives, Marta Mele, Teresa Abello, Ivanela Kondova, Ronald E. Bontrop, Anne Pusey, Felix Lankester, John A. Kiyang, Richard A. Bergl, Elizabeth Lonsdorf, Simon Myers, Mario Ventura, Pascal Gagneux, David Comas, Hans Siegismund, Julie Blanc, Lidia Agueda-Calpena, Marta Gut, Lucinda Fulton, Sarah A. Tishkoff, James C. Mullikin, Richard K. Wilson, Ivo G. Gut, Mary Katherine Gonder, Oliver A. Ryder, Beatrice H. Hahn, Arcadi Navarro, Joshua M. Akey, Jaume Bertranpetit, David Reich, Thomas Mailund, Mikkel H. Schierup, Christina Hvilsom, Aida M. Andrés, Jeffrey D. Wall, Carlos D. Bustamante, Michael F. Hammer, Evan E. Eichler () and Tomas Marques-Bonet ()
Additional contact information
Javier Prado-Martinez: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Peter H. Sudmant: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Jeffrey M. Kidd: University of Michigan, 1241 E. Catherine Street, Ann Arbor, Michigan 48109, USA
Heng Li: Harvard Medical School, Boston, 77 Avenue Louis Pasteur, Massachusetts 02115, USA
Joanna L. Kelley: Stanford University, 300 Pasteur Drive, Lane L301, Stanford, California 94305, USA
Belen Lorente-Galdos: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Krishna R. Veeramah: Arizona Research Laboratories, University of Arizona, 1041 E. Lowell Street, Tucson, Arizona 85721, USA
August E. Woerner: Arizona Research Laboratories, University of Arizona, 1041 E. Lowell Street, Tucson, Arizona 85721, USA
Timothy D. O’Connor: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Gabriel Santpere: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Alexander Cagan: Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, 04103, Germany
Christoph Theunert: Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, 04103, Germany
Ferran Casals: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Hafid Laayouni: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Kasper Munch: Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark
Asger Hobolth: Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark
Anders E. Halager: Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark
Maika Malig: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Jessica Hernandez-Rodriguez: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Irene Hernando-Herraez: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Kay Prüfer: Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, 04103, Germany
Marc Pybus: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Laurel Johnstone: Arizona Research Laboratories, University of Arizona, 1041 E. Lowell Street, Tucson, Arizona 85721, USA
Michael Lachmann: Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, 04103, Germany
Can Alkan: Bilkent University, Faculty of Engineering, Ankara, 06800, Turkey
Dorina Twigg: University of Michigan, 1241 E. Catherine Street, Ann Arbor, Michigan 48109, USA
Natalia Petit: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Carl Baker: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Fereydoun Hormozdiari: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Marcos Fernandez-Callejo: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Marc Dabad: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Michael L. Wilson: University of Minnesota
Laurie Stevison: Institute for Human Genetics, University of California San Francisco
Cristina Camprubí: Departament de Biologia Cel.lular, Fisiologia i Immunologia, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Catalonia 08193, Spain
Tiago Carvalho: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Aurora Ruiz-Herrera: Departament de Biologia Cel.lular, Fisiologia i Immunologia, Universitat Autònoma de Barcelona, Cerdanyola del Vallès, Catalonia 08193, Spain
Laura Vives: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Marta Mele: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Teresa Abello: Parc Zoològic de Barcelona, Barcelona, Catalonia 08003, Spain
Ivanela Kondova: Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH, Rijswijk, The Netherlands
Ronald E. Bontrop: Biomedical Primate Research Centre, P.O. Box 3306, 2280 GH, Rijswijk, The Netherlands
Anne Pusey: Duke University
Felix Lankester: Limbe Wildlife Centre, BP 878, Limbe, Cameroon
John A. Kiyang: Limbe Wildlife Centre, BP 878, Limbe, Cameroon
Richard A. Bergl: North Carolina Zoological Park
Elizabeth Lonsdorf: Franklin and Marshall College
Simon Myers: Oxford University, 1 South Parks Road, Oxford OX1 3TG, UK
Mario Ventura: University of Bari, Bari 70126, Italy
Pascal Gagneux: University of California San Diego
David Comas: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Hans Siegismund: Bioinformatics, University of Copenhagen, Copenhagen 2200, Denmark
Julie Blanc: Centro Nacional de Análisis Genómico (CNAG), PCB, Barcelona, Catalonia 08028, Spain
Lidia Agueda-Calpena: Centro Nacional de Análisis Genómico (CNAG), PCB, Barcelona, Catalonia 08028, Spain
Marta Gut: Centro Nacional de Análisis Genómico (CNAG), PCB, Barcelona, Catalonia 08028, Spain
Lucinda Fulton: Genome Sequencing Center, Washington University School of Medicine
Sarah A. Tishkoff: Department of Biology and Genetics. University of Pennsylvania
James C. Mullikin: National Institutes of Health Intramural Sequencing Center (NISC)
Richard K. Wilson: Genome Sequencing Center, Washington University School of Medicine
Ivo G. Gut: Centro Nacional de Análisis Genómico (CNAG), PCB, Barcelona, Catalonia 08028, Spain
Mary Katherine Gonder: Biological Sciences, University at Albany, State University of New York
Oliver A. Ryder: San Diego Zoo’s Institute for Conservation Research, 15600 San Pasqual Valley Road, Escondido, California 92027, USA
Beatrice H. Hahn: Perelman School of Medicine, University of Pennsylvania
Arcadi Navarro: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
Joshua M. Akey: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Jaume Bertranpetit: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain
David Reich: Harvard Medical School, Boston, 77 Avenue Louis Pasteur, Massachusetts 02115, USA
Thomas Mailund: Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark
Mikkel H. Schierup: Bioinformatics Research Centre, Aarhus University, DK-8000 Aarhus C, Denmark
Christina Hvilsom: Bioinformatics, University of Copenhagen, Copenhagen 2200, Denmark
Aida M. Andrés: Max Planck Institute for Evolutionary Anthropology, Deutscher Platz 6, Leipzig, 04103, Germany
Jeffrey D. Wall: Institute for Human Genetics, University of California San Francisco
Carlos D. Bustamante: Stanford University, 300 Pasteur Drive, Lane L301, Stanford, California 94305, USA
Michael F. Hammer: Arizona Research Laboratories, University of Arizona, 1041 E. Lowell Street, Tucson, Arizona 85721, USA
Evan E. Eichler: University of Washington, 3720 15th Avenue NE, Seattle, Washington 98195, USA
Tomas Marques-Bonet: Institut de Biologia Evolutiva, (CSIC-Universitat Pompeu Fabra), PRBB, Doctor Aiguader 88, Barcelona, Catalonia 08003, Spain

Nature, 2013, vol. 499, issue 7459, 471-475

Abstract: High-coverage sequencing of 79 (wild and captive) individuals representing all six non-human great ape species has identified over 88 million single nucleotide polymorphisms providing insight into ape genetic variation and evolutionary history and enabling comparison with human genetic diversity.

Date: 2013
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DOI: 10.1038/nature12228

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