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Enhancer loops appear stable during development and are associated with paused polymerase

Yad Ghavi-Helm, Felix A. Klein, Tibor Pakozdi, Lucia Ciglar, Daan Noordermeer, Wolfgang Huber and Eileen E. M. Furlong ()
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Yad Ghavi-Helm: European Molecular Biology Laboratory, Genome Biology Unit, D-69117 Heidelberg, Germany
Felix A. Klein: European Molecular Biology Laboratory, Genome Biology Unit, D-69117 Heidelberg, Germany
Tibor Pakozdi: European Molecular Biology Laboratory, Genome Biology Unit, D-69117 Heidelberg, Germany
Lucia Ciglar: European Molecular Biology Laboratory, Genome Biology Unit, D-69117 Heidelberg, Germany
Daan Noordermeer: Swiss Federal Institute of Technology, School of Life Sciences, CH-1015 Lausanne, Switzerland
Wolfgang Huber: European Molecular Biology Laboratory, Genome Biology Unit, D-69117 Heidelberg, Germany
Eileen E. M. Furlong: European Molecular Biology Laboratory, Genome Biology Unit, D-69117 Heidelberg, Germany

Nature, 2014, vol. 512, issue 7512, 96-100

Abstract: A high-resolution map of enhancer three-dimensional contacts during Drosophila embryogenesis shows that although local regulatory interactions are frequent, long-range interactions are also very common; unexpectedly, most interactions appear unchanged between tissues and across development and are formed prior to gene expression, indicating that transcription initiates from preformed enhancer–promoter loops, which are associated with paused polymerase.

Date: 2014
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DOI: 10.1038/nature13417

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