Comparative analysis of metazoan chromatin organization

Joshua W. K. Ho, Youngsook L. Jung, Tao Liu, Burak H. Alver, Soohyun Lee, Kohta Ikegami, Kyung-Ah Sohn, Aki Minoda, Michael Y. Tolstorukov, Alex Appert, Stephen C. J. Parker, Tingting Gu, Anshul Kundaje, Nicole C. Riddle, Eric Bishop, Thea A. Egelhofer, Sheng'en Shawn Hu, Artyom A. Alekseyenko, Andreas Rechtsteiner, Dalal Asker, Jason A. Belsky, Sarah K. Bowman, Q. Brent Chen, Ron A.-J. Chen, Daniel S. Day, Yan Dong, Andrea C. Dose, Xikun Duan, Charles B. Epstein, Sevinc Ercan, Elise A. Feingold, Francesco Ferrari, Jacob M. Garrigues, Nils Gehlenborg, Peter J. Good, Psalm Haseley, Daniel He, Moritz Herrmann, Michael M. Hoffman, Tess E. Jeffers, Peter V. Kharchenko, Paulina Kolasinska-Zwierz, Chitra V. Kotwaliwale, Nischay Kumar, Sasha A. Langley, Erica N. Larschan, Isabel Latorre, Maxwell W. Libbrecht, Xueqiu Lin, Richard Park, Michael J. Pazin, Hoang N. Pham, Annette Plachetka, Bo Qin, Yuri B. Schwartz, Noam Shoresh, Przemyslaw Stempor, Anne Vielle, Chengyang Wang, Christina M. Whittle, Huiling Xue, Robert E. Kingston, Ju Han Kim, Bradley E. Bernstein, Abby F. Dernburg, Vincenzo Pirrotta, Mitzi I. Kuroda, William S. Noble, Thomas D. Tullius, Manolis Kellis, David M. MacAlpine (), Susan Strome (), Sarah C. R. Elgin (), Xiaole Shirley Liu (), Jason D. Lieb (), Julie Ahringer (), Gary H. Karpen () and Peter J. Park ()
Additional contact information
Joshua W. K. Ho: Center for Biomedical Informatics, Harvard Medical School
Youngsook L. Jung: Center for Biomedical Informatics, Harvard Medical School
Tao Liu: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute
Burak H. Alver: Center for Biomedical Informatics, Harvard Medical School
Soohyun Lee: Center for Biomedical Informatics, Harvard Medical School
Kohta Ikegami: University of North Carolina at Chapel Hill
Kyung-Ah Sohn: Ajou University, Suwon 443-749, Korea
Aki Minoda: Lawrence Berkeley National Lab, Berkeley, California 94720, USA
Michael Y. Tolstorukov: Center for Biomedical Informatics, Harvard Medical School
Alex Appert: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Stephen C. J. Parker: National Institute of General Medical Sciences, National Institutes of Health
Tingting Gu: Washington University in St. Louis
Anshul Kundaje: Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology
Nicole C. Riddle: Washington University in St. Louis
Eric Bishop: Center for Biomedical Informatics, Harvard Medical School
Thea A. Egelhofer: Cell and Developmental Biology, University of California Santa Cruz
Sheng'en Shawn Hu: School of Life Science and Technology, Tongji University
Artyom A. Alekseyenko: Brigham and Women’s Hospital, Harvard Medical School
Andreas Rechtsteiner: Cell and Developmental Biology, University of California Santa Cruz
Dalal Asker: Rutgers University
Jason A. Belsky: Duke University Medical Center
Sarah K. Bowman: Massachusetts General Hospital and Harvard Medical School
Q. Brent Chen: University of North Carolina at Chapel Hill
Ron A.-J. Chen: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Daniel S. Day: Center for Biomedical Informatics, Harvard Medical School
Yan Dong: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Andrea C. Dose: University of California Davis
Xikun Duan: School of Life Science and Technology, Tongji University
Charles B. Epstein: Broad Institute
Sevinc Ercan: University of North Carolina at Chapel Hill
Elise A. Feingold: National Human Genome Research Institute, National Institutes of Health
Francesco Ferrari: Center for Biomedical Informatics, Harvard Medical School
Jacob M. Garrigues: Cell and Developmental Biology, University of California Santa Cruz
Nils Gehlenborg: Center for Biomedical Informatics, Harvard Medical School
Peter J. Good: National Human Genome Research Institute, National Institutes of Health
Psalm Haseley: Center for Biomedical Informatics, Harvard Medical School
Daniel He: University of California, Berkeley, Berkeley, California 94720, USA
Moritz Herrmann: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Michael M. Hoffman: Princess Margaret Cancer Centre, Toronto, Ontario M6G 1L7, Canada
Tess E. Jeffers: University of North Carolina at Chapel Hill
Peter V. Kharchenko: Center for Biomedical Informatics, Harvard Medical School
Paulina Kolasinska-Zwierz: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Chitra V. Kotwaliwale: University of California, Berkeley, Berkeley, California 94720, USA
Nischay Kumar: Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology
Sasha A. Langley: Lawrence Berkeley National Lab, Berkeley, California 94720, USA
Erica N. Larschan: Cellular Biology and Biochemistry, Brown University
Isabel Latorre: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Maxwell W. Libbrecht: University of Washington
Xueqiu Lin: School of Life Science and Technology, Tongji University
Richard Park: Center for Biomedical Informatics, Harvard Medical School
Michael J. Pazin: National Human Genome Research Institute, National Institutes of Health
Hoang N. Pham: Lawrence Berkeley National Lab, Berkeley, California 94720, USA
Annette Plachetka: Brigham and Women’s Hospital, Harvard Medical School
Bo Qin: School of Life Science and Technology, Tongji University
Yuri B. Schwartz: Rutgers University
Noam Shoresh: Broad Institute
Przemyslaw Stempor: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Anne Vielle: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Chengyang Wang: School of Life Science and Technology, Tongji University
Christina M. Whittle: University of California, Berkeley, Berkeley, California 94720, USA
Huiling Xue: Center for Biomedical Informatics, Harvard Medical School
Robert E. Kingston: Massachusetts General Hospital and Harvard Medical School
Ju Han Kim: Systems Biomedical Informatics Research Center, College of Medicine, Seoul National University, Seoul 110-799, Korea
Bradley E. Bernstein: Broad Institute
Abby F. Dernburg: Lawrence Berkeley National Lab, Berkeley, California 94720, USA
Vincenzo Pirrotta: Rutgers University
Mitzi I. Kuroda: Brigham and Women’s Hospital, Harvard Medical School
William S. Noble: University of Washington
Thomas D. Tullius: Program in Bioinformatics, Boston University
Manolis Kellis: Computer Science and Artificial Intelligence Laboratory, Massachusetts Institute of Technology
David M. MacAlpine: Duke University Medical Center
Susan Strome: Cell and Developmental Biology, University of California Santa Cruz
Sarah C. R. Elgin: Washington University in St. Louis
Xiaole Shirley Liu: Center for Functional Cancer Epigenetics, Dana-Farber Cancer Institute
Jason D. Lieb: University of North Carolina at Chapel Hill
Julie Ahringer: University of Cambridge, Tennis Court Road, Cambridge CB2 1QN, UK
Gary H. Karpen: Lawrence Berkeley National Lab, Berkeley, California 94720, USA
Peter J. Park: Center for Biomedical Informatics, Harvard Medical School

Nature, 2014, vol. 512, issue 7515, 449-452

Abstract: A large collection of new modENCODE and ENCODE genome-wide chromatin data sets from cell lines and developmental stages in worm, fly and human are analysed; this reveals many conserved features of chromatin organization among the three organisms, as well as notable differences in the composition and locations of repressive chromatin.

Date: 2014
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DOI: 10.1038/nature13415

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