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Disruption of TET2 promotes the therapeutic efficacy of CD19-targeted T cells

Joseph A. Fraietta, Christopher L. Nobles, Morgan A. Sammons, Stefan Lundh, Shannon A. Carty, Tyler J. Reich, Alexandria P. Cogdill, Jennifer J. D. Morrissette, Jamie E. DeNizio, Shantan Reddy, Young Hwang, Mercy Gohil, Irina Kulikovskaya, Farzana Nazimuddin, Minnal Gupta, Fang Chen, John K. Everett, Katherine A. Alexander, Enrique Lin-Shiao, Marvin H. Gee, Xiaojun Liu, Regina M. Young, David Ambrose, Yan Wang, Jun Xu, Martha S. Jordan, Katherine T. Marcucci, Bruce L. Levine, K. Christopher Garcia, Yangbing Zhao, Michael Kalos, David L. Porter, Rahul M. Kohli, Simon F. Lacey, Shelley L. Berger, Frederic D. Bushman, Carl H. June () and J. Joseph Melenhorst ()
Additional contact information
Joseph A. Fraietta: University of Pennsylvania
Christopher L. Nobles: University of Pennsylvania
Morgan A. Sammons: University of Pennsylvania
Stefan Lundh: University of Pennsylvania
Shannon A. Carty: University of Pennsylvania
Tyler J. Reich: University of Pennsylvania
Alexandria P. Cogdill: University of Pennsylvania
Jennifer J. D. Morrissette: University of Pennsylvania
Jamie E. DeNizio: University of Pennsylvania
Shantan Reddy: University of Pennsylvania
Young Hwang: University of Pennsylvania
Mercy Gohil: University of Pennsylvania
Irina Kulikovskaya: University of Pennsylvania
Farzana Nazimuddin: University of Pennsylvania
Minnal Gupta: University of Pennsylvania
Fang Chen: University of Pennsylvania
John K. Everett: University of Pennsylvania
Katherine A. Alexander: University of Pennsylvania
Enrique Lin-Shiao: University of Pennsylvania
Marvin H. Gee: Stanford University School of Medicine
Xiaojun Liu: University of Pennsylvania
Regina M. Young: University of Pennsylvania
David Ambrose: University of Pennsylvania
Yan Wang: University of Pennsylvania
Jun Xu: University of Pennsylvania
Martha S. Jordan: University of Pennsylvania
Katherine T. Marcucci: University of Pennsylvania
Bruce L. Levine: University of Pennsylvania
K. Christopher Garcia: Stanford University School of Medicine
Yangbing Zhao: University of Pennsylvania
Michael Kalos: University of Pennsylvania
David L. Porter: University of Pennsylvania
Rahul M. Kohli: University of Pennsylvania
Simon F. Lacey: University of Pennsylvania
Shelley L. Berger: University of Pennsylvania
Frederic D. Bushman: University of Pennsylvania
Carl H. June: University of Pennsylvania
J. Joseph Melenhorst: University of Pennsylvania

Nature, 2018, vol. 558, issue 7709, 307-312

Abstract: Abstract Cancer immunotherapy based on genetically redirecting T cells has been used successfully to treat B cell malignancies1–3. In this strategy, the T cell genome is modified by integration of viral vectors or transposons encoding chimaeric antigen receptors (CARs) that direct tumour cell killing. However, this approach is often limited by the extent of expansion and persistence of CAR T cells4,5. Here we report mechanistic insights from studies of a patient with chronic lymphocytic leukaemia treated with CAR T cells targeting the CD19 protein. Following infusion of CAR T cells, anti-tumour activity was evident in the peripheral blood, lymph nodes and bone marrow; this activity was accompanied by complete remission. Unexpectedly, at the peak of the response, 94% of CAR T cells originated from a single clone in which lentiviral vector-mediated insertion of the CAR transgene disrupted the methylcytosine dioxygenase TET2 gene. Further analysis revealed a hypomorphic mutation in this patient’s second TET2 allele. TET2-disrupted CAR T cells exhibited an epigenetic profile consistent with altered T cell differentiation and, at the peak of expansion, displayed a central memory phenotype. Experimental knockdown of TET2 recapitulated the potency-enhancing effect of TET2 dysfunction in this patient’s CAR T cells. These findings suggest that the progeny of a single CAR T cell induced leukaemia remission and that TET2 modification may be useful for improving immunotherapies.

Date: 2018
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DOI: 10.1038/s41586-018-0178-z

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