Genome-wide analysis identifies NR4A1 as a key mediator of T cell dysfunction
Xindong Liu (),
Yun Wang,
Huiping Lu,
Jing Li,
Xiaowei Yan,
Minglu Xiao,
Jing Hao,
Andrei Alekseev,
Hiep Khong,
Tenghui Chen,
Rui Huang,
Jin Wu,
Qiwen Zhao,
Qi Wu,
Senlin Xu,
Xiaohu Wang,
Wei Jin,
Shicang Yu,
Yan Wang,
Lai Wei,
Aibo Wang,
Bo Zhong,
Ling Ni,
Xiaolong Liu,
Roza Nurieva,
Lilin Ye,
Qiang Tian,
Xiu-Wu Bian () and
Chen Dong ()
Additional contact information
Xindong Liu: Third Military Medical University (Army Medical University)
Yun Wang: Third Military Medical University (Army Medical University)
Huiping Lu: Tsinghua University
Jing Li: Tsinghua University
Xiaowei Yan: Institute for Systems Biology
Minglu Xiao: Third Military Medical University (Army Medical University)
Jing Hao: Tsinghua University
Andrei Alekseev: MD Anderson Cancer Center
Hiep Khong: MD Anderson Cancer Center
Tenghui Chen: MD Anderson Cancer Center
Rui Huang: Third Military Medical University (Army Medical University)
Jin Wu: Third Military Medical University (Army Medical University)
Qiwen Zhao: Third Military Medical University (Army Medical University)
Qi Wu: Tsinghua University
Senlin Xu: Third Military Medical University (Army Medical University)
Xiaohu Wang: Tsinghua University
Wei Jin: Tsinghua University
Shicang Yu: Third Military Medical University (Army Medical University)
Yan Wang: Third Military Medical University (Army Medical University)
Lai Wei: Sun Yat-sen University
Aibo Wang: MD Anderson Cancer Center
Bo Zhong: School of Medicine, Wuhan University
Ling Ni: Tsinghua University
Xiaolong Liu: Chinese Academy of Sciences
Roza Nurieva: MD Anderson Cancer Center
Lilin Ye: Third Military Medical University (Army Medical University)
Qiang Tian: Institute for Systems Biology
Xiu-Wu Bian: Third Military Medical University (Army Medical University)
Chen Dong: Tsinghua University
Nature, 2019, vol. 567, issue 7749, 525-529
Abstract:
Abstract T cells become dysfunctional when they encounter self antigens or are exposed to chronic infection or to the tumour microenvironment1. The function of T cells is tightly regulated by a combinational co-stimulatory signal, and dominance of negative co-stimulation results in T cell dysfunction2. However, the molecular mechanisms that underlie this dysfunction remain unclear. Here, using an in vitro T cell tolerance induction system in mice, we characterize genome-wide epigenetic and gene expression features in tolerant T cells, and show that they are distinct from effector and regulatory T cells. Notably, the transcription factor NR4A1 is stably expressed at high levels in tolerant T cells. Overexpression of NR4A1 inhibits effector T cell differentiation, whereas deletion of NR4A1 overcomes T cell tolerance and exaggerates effector function, as well as enhancing immunity against tumour and chronic virus. Mechanistically, NR4A1 is preferentially recruited to binding sites of the transcription factor AP-1, where it represses effector-gene expression by inhibiting AP-1 function. NR4A1 binding also promotes acetylation of histone 3 at lysine 27 (H3K27ac), leading to activation of tolerance-related genes. This study thus identifies NR4A1 as a key general regulator in the induction of T cell dysfunction, and a potential target for tumour immunotherapy.
Date: 2019
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DOI: 10.1038/s41586-019-0979-8
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